Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20hostae_20[genbank_20GCA_5F002234235.1_202017-07-27] 3,686 sequences; 54,581,980 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq2855 398 1e-105 seq3012 358 1e-93 >seq2855 Length=139020 Score = 398 bits (440), Expect = 1e-105 Identities = 611/858 (71%), Gaps = 24/858 (3%) Strand=Plus/Minus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||||||||| || ||| |||||| |||||||||||||| || Sbjct 126371 ATCTGGCAAATGTACAAGAAGGCTGAGGCTTCCTTCTGGACTGCCGAGGAGATTGATCTC 126312 Query 42360 GCCAAGGACACGGCCGGCTGGGAGTCA-----CTGTCTGAGAACGAAAAGTTTTTCCTCA 42414 ||||||| || |||| | || ||| ||| | || |||| ||| || Sbjct 126311 TCCAAGGATCTCCACGACTGGAA--CAACCGCCTGACTGCCGATGAGCAGTTCTTCGTCT 126254 Query 42415 AAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCA 42474 |||| || ||||||||||| |||||||| || || ||||| |||||||| | Sbjct 126253 CTCACATCCTTGCCTTCTTCGCTGCCTCTGATGGTATTGTCAACGAGAACCTCGTTGAGC 126194 Query 42475 GGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCA 42534 | |||| ||||| ||| | ||||| || || ||||||||||||||||| | Sbjct 126193 GATTCAGTGGCGAGGTCCAGATCCCCGAGGCTCGTTGTTTCTACGGCTTCCAGATCATGA 126134 Query 42535 TAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATC 42591 | |||||| | ||||||||| ||| || || |||| |||| |||||| ||| | Sbjct 126133 TGGAGAACATCCACTCTGAGACCTACTCC---CTTCTCATTGACACCTACATCAAGGAGC 126077 Query 42592 CCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGG 42651 ||| | |||| | | || ||||| ||||| ||||| || || |||||| ||||||| Sbjct 126076 CCGCCCAGCGAACCTACCTCTTCAACGCCATTGAGACCATTCCTTGCATCCGAAAGAAGG 126017 Query 42652 CGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAG 42711 | |||||||| || |||||| || | ||| | | || | | || | || || | Sbjct 126016 CCGACTGGGCCATCCGATGGATCCAGGATAAGGACTCCTCCTTTGCCCAGCGTCTCGTTG 125957 Query 42712 CCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCA 42771 |||| | || || ||||| ||||||||| || ||||| ||||| ||||||||||||| Sbjct 125956 CCTTCGCTGCTGTTGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCTATCTTCTGGCTCA 125897 Query 42772 AGCAGAA-GGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAG 42830 || || ||| || |||||||| || |||||||| ||||| |||||| | || ||| Sbjct 125896 AGAAGCGTGGTCTC-ATGCCCGGCCTGACCTTCTCCAACGAGCTCATCTCTCGTGATGAG 125838 Query 42831 GGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTC-AGGCACAAGCCCTC 42889 || || || | ||||||||||||||||| ||| |||||| ||| | ||| | Sbjct 125837 GGTCTCCACACTGACTTTGCCTGCCTCCTCCACTC---TCACCTCAAGGGTCGTGCCAGC 125781 Query 42890 GAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCAC 42949 ||| || | ||| || ||||||||| || ||||| || ||| ||||||||||||| Sbjct 125780 -AAGCAGATGATCCAGGACATCATCACTGATGCCGTCACCATTGAGCAGGAGTTCCTCAC 125722 Query 42950 GCAGTCGCTGCCC-GTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCC 43008 || | || ||| ||| |||| ||||||||||| ||||||||| |||| || Sbjct 125721 TGAGGCTCTCCCCTGTG-CCCTTCTCGGCATGAACTCTGACCTCATGAAGCAGTATATTG 125663 Query 43009 AGTACGTCGCCGACCATCTCC-TGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCG 43067 ||| ||||||||| | ||||| ||| | ||| || | ||||||| | | Sbjct 125662 AGTTCGTCGCCGATCGTCTCCTTGTTGCTCTTGGCAACGAGAAG-GTCTACAAGGCTACC 125604 Query 43068 TGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAG 43127 |||||||||||| |||||||||||||| | | |||||||||||||| ||||||||| Sbjct 125603 AACCCCTTCGACTTCATGGAGAACATCTCCCTTGGTGGCAAGACCAACTTCTTCGAGAAG 125544 Query 43128 CGCGTCGCCGACTACCAG 43145 || || |||||||||||| Sbjct 125543 CGTGTTGCCGACTACCAG 125526 >seq3012 Length=424931 Score = 358 bits (396), Expect = 1e-93 Identities = 904/1358 (67%), Gaps = 41/1358 (3%) Strand=Plus/Plus Query 244090 GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGG 244149 ||| || ||||| ||||| || | || || || |||||||||| |||| | || || Sbjct 42701 GTTGACAACCTGGAACTCACCAGCGAGGACACGTCGCTGGTAGATGTTGGAGGTGTAGGG 42760 Query 244150 CTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACAC 244209 ||||| || ||| |||||||||| ||||| | || || ||||| ||||| || | | Sbjct 42761 CTCGAAGCACTCGTTGTTGCCCAGAATCTGAGAGGTACTGGCAGTAGGCATAGGAGCAAG 42820 Query 244210 CAGCAGACTGTTCCTCACGCCGTGCCTCTGGA-TGCGGAGTCTGAGCTCGTTCCAGTCCC 244268 ||||||||||| | | ||||| ||| || | | || |||| |||| | Sbjct 42821 GAGCAGACTGTTACGGATACCGTGTGTCTTGACTTC-----CT---CTCGAAG-AGTCTC 42871 Query 244269 ACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGC 244328 || ||| ||||||| | | |||| | ||||||||| ||||| || | |||| Sbjct 42872 CCAGTCCC-AGAGGTCAGAGGGCTTGACGTTCCACATGTCGAACTGGAGGATACCCTCAG 42930 Query 244329 TGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTT-ACAGCTC 244387 | |||| ||||| | |||| | ||||||||| || || |||||||| || | Sbjct 42931 AGGCGGGAGAGCCCTTGAAGGTGGAGTAGGGACCCTCCTCCTTGGCCAGCTGCACGGAGG 42990 Query 244388 TCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTG 244447 || |||||| |||| ||||||||||||||||||| |||||| | || || |||| | Sbjct 42991 CAGT-GAGGGCAGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTGAGCTCACGAGCCTCG 43049 Query 244448 CCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATG 244507 | |||||| |||| || | ||| | || || || ||||| || |||| Sbjct 43050 GGTGACTCGAAGGGCATGCGCAGAGCAAGGAAAGCATCAGCAAGGCCCTGAACACCGAGA 43109 Query 244508 CCGATGGGTCTGTGTCGCTTGTTGGAGC-GCATGGCTTCGGGCACGGGGTAAAAGTTGCC 244566 || ||||||| ||| ||| ||||| | || | || |||| || ||||| ||| | Sbjct 43110 CCAATGGGTCGGTGGCGCATGTTGCTGTTGCGAGCCTCCGGG-ACAGGGTAGTGGTTCAC 43168 Query 244567 GTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGAC-GACGTCGGCCAGCAGCTGAA 244625 |||||| | |||||| |||||||| | | || | ||| ||| ||| || | || | Sbjct 43169 GTCGATGATCTTGTTCAGGTTGCGAATAA-CAACCTGACTGACCTCGTGCAACTTCTTGA 43227 Query 244626 AGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGC 244685 ||||||| | ||| || ||| | || ||| | || | || || | Sbjct 43228 AGTCGTA---GCAGGCCTCATCGTAGTTGATGA-----AGGAAGGC----AGAGCCAGAG 43275 Query 244686 TGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGA 244745 ||| ||||||||||| || ||||| || | | |||| || ||| || ||||| | Sbjct 43276 AGGCAAGGTTGCAGACAGCGACCTCGTCAGGGGCACAATACTCGATAATTTCAGTGCACA 43335 Query 244746 GGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCT 244805 ||||| || ||||||||| |||| || || ||| |||| ||||||||| |||| Sbjct 43336 GGTTAGAGCTTCGGATGGTGCCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATCCT 43395 Query 244806 TGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGT 244865 ||||||||||||| || || ||||| ||| || | || | | | ||| || | Sbjct 43396 TGTAGAGCATGAAAGGGTTTCCAGTCTCAGTCTGAGCCTCAAGAATGGCATACCAAAGCT 43455 Query 244866 CCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCT 244925 | |||||||| ||| ||||| |||||||||| ||| || |||||| |||| Sbjct 43456 TCTGAGCCTTGATAGTCTTGCGACCCTTGCCCTCCTTCTCATACTTTTCGTACAGAGCCT 43515 Query 244926 CGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCC 244985 ||||||| || || ||| | ||||| |||||| |||||||| || ||| Sbjct 43516 CGAACTCCTCACCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGGCACATCAGTGTCC 43575 Query 244986 ACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGA 245045 | || ||| | | || | || ||| || || || |||||||| ||||| |||| | Sbjct 43576 AGTCACCGTTCTTTTCAACACGCTTCATAAAAAGATCAGGGATCCAAAGGGCGAGGAACA 43635 Query 245046 GGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGA 245105 |||| | || | ||| || || |||||| | || || | || || |||| Sbjct 43636 GGTCACGGGCACGGACCTCCTCTTTACCGTGGTTCTTTCGGAGATCAAGGAACTCGAAGA 43695 Query 245106 CGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCT 245165 | || |||||| ||||| | ||||| || | || ||||| ||||||||||| |||| Sbjct 43696 CATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCACCCT 43755 Query 245166 GGTCCACCATCCTCTCGAGC----GCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTA 245221 | || | | | ||||| |||||||| || || |||| || | |||||| Sbjct 43756 GATCGA----CATAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACGCCGTTG 43811 Query 245222 GAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTG--AGGTTGCTGATGGACA 245279 || |||||||| || |||||||| ||| | | | | | | ||| | | || Sbjct 43812 GATGTACCGTTGGTACCGGCGATGTAGGAGCCAGTAGCACGGATACGGTGC--ACGTTCA 43869 Query 245280 TGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGC 245339 || | || || || ||||||||| | ||| ||| |||||| || || |||| Sbjct 43870 GACCAATACCTCCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATGC 43929 Query 245340 CCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGC 245399 |||| || ||||| |||||| | | || ||||| || |||| ||||||| ||| Sbjct 43930 CCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGCTGAGGGG 43989 Query 245400 TGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAG 245437 | | | |||||| || ||||| ||| || |||||| Sbjct 43990 TACCAGCGTTGAAGAGTGTGGGAGAGGCATGTGTAAAG 44027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944295689571360