Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20hostae_20[genbank_20GCA_5F002234235.1_202017-07-27] 3,686 sequences; 54,581,980 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq2134 104 5e-17 seq2855 102 2e-16 >seq2134 Length=54328 Score = 104 bits (114), Expect = 5e-17 Identities = 175/251 (70%), Gaps = 2/251 (1%) Strand=Plus/Minus Query 334105 AGTCAATGATAGCCATGTTAGAATCGGACCCGTCGAGATCGTGTTCCACGTAAGCAGTTT 334164 |||| || | | ||| | || ||||| |||||| ||||| || ||| | |||| | Sbjct 46836 AGTCGATAGTGGTCATCTCAGTATCGGCGGAGTCGAGGTCGTGCTCGACGAAGACAGTCT 46777 Query 334165 TCAAAACA-TCCGCAGAGGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGA 334223 | | || || || |||| |||||| ||| ||| |||| || |||||||| || Sbjct 46776 TGACCTCACTCTGCTTAGGGAAACCCT-CAACCTGCTCGTTGTTGATGGCGCGCATGAGG 46718 Query 334224 GTTGATTTACCCGCCCCGTTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTCAGATTG 334283 || || || || | ||||| || ||||| |||||||| || | |||||||| ||| | Sbjct 46717 GTGGACTTTCCGGAACCGTTGGGACCACAAAGACCGTAACGCTGACCACGCTTGAGACGG 46658 Query 334284 AACCGCGTATTGTTCAGAAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACAC 334343 | | || | ||| |||||||| || |||| || || ||||| || ||| | || Sbjct 46657 AGATGGGTCTGGTTGAGAAGAATCTTGGCACCGTAGGCAAGAGAGAAGGTACAGTTGCAA 46598 Query 334344 AGATCCTCACC 334354 ||||||||||| Sbjct 46597 AGATCCTCACC 46587 >seq2855 Length=139020 Score = 102 bits (112), Expect = 2e-16 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 243562 CTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 243621 ||| | |||||||||||||| |||||| ||||| || || ||||| ||||| || | Sbjct 125702 CTTCTCGGCATGAACTCTGACCTCATGAAGCAGTATATTGAGTTCGTCGCCGATCGTCTC 125643 Query 243622 TTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAG 243681 | | || ||||| | ||||| || ||||| | | |||||||| | ||| |||||| Sbjct 125642 CTTGTTGCTCTTGGCAACGAGAAGGTCTACAAGGCTACCAACCCCTTCGACTTCATGGAG 125583 Query 243682 CTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGT 243725 ||| || ||| || || || ||||||||||| |||||||| Sbjct 125582 AACATCTCCCTTGGTGGCAAGACCAACTTCTTCGAGAAGCGTGT 125539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102827914424100