Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20hostae_20[genbank_20GCA_5F002234235.1_202017-07-27] 3,686 sequences; 54,581,980 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq3544 120 3e-22 seq2145 120 3e-22 seq274 111 2e-19 >seq3544 Length=114148 Score = 120 bits (132), Expect = 3e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||| || ||||| | || |||||||||||||| || || Sbjct 38558 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGTCCATCCTCGAGCTGCTTGCCAGCAAA 38499 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||||| || | || |||||||||| |||||| ||||| ||| Sbjct 38498 GATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 38440 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | |||||| || ||||| || | ||||| || || ||||| || || || | Sbjct 38439 TGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGA 38380 Query 46581 CAAAGATTTGCATTTTGC 46598 | || || ||||| |||| Sbjct 38379 CGAAAATCTGCATCTTGC 38362 >seq2145 Length=460897 Score = 120 bits (132), Expect = 3e-22 Identities = 144/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || ||||| || || || ||||| |||| || ||||||||||| || || Sbjct 353769 CTCCTTCTGAATGTTGTAATCAGAGAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAA 353710 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||||||| |||||||||| || | || |||||||||| ||||| ||||| ||| Sbjct 353709 GATCAAGCGTTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGA-CGT 353651 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | |||||| || || || || | |||||||| ||||| |||| || || | Sbjct 353650 TGTCGATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGA 353591 Query 46581 CAAAGATTTGCAT 46593 | ||||| ||||| Sbjct 353590 CGAAGATCTGCAT 353578 Score = 98.7 bits (108), Expect = 1e-15 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||| || ||||| | || || |||||||| || ||||| Sbjct 354507 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTCCAGCTGCTTACCAGCGAA 354448 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | || ||||| || | || | | |||||||||| ||||| |||| | ||| Sbjct 354447 GATAAGACGTTGCTGATCAGGGGGGATACCCTCCTTGTCCTGAATCTTACTCTTCA-CGT 354389 Query 46522 CGCCACC-GTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | || ||||| || || || || || | ||||||||||| || || || || |||| Sbjct 354388 TGTCAATAGTGTCACTGGACTCGACCTCAAGGGTGATGGTTTTTCCGGTGAGAGTCTTAA 354329 Query 46581 CAAAGATTTGCAT 46593 | || || ||||| Sbjct 354328 CGAAAATCTGCAT 354316 Score = 93.3 bits (102), Expect = 5e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| ||||||||||| ||||| || |||| || || |||||||| || || Sbjct 354278 TCCTTCTGGATGTTGTAGTCGGAAAGAGTTCGGCCGTCCTCAAGTTGCTTGCCAGCAAAG 354219 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | ||||| || |||| || | | ||||||||| ||||| |||| | | Sbjct 354218 ATGAGTCGCTGTTGATCGGGAGGAATACCCTCCTTGTCTTGAATCTTGCTCTTCACATTA 354159 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | || ||| || || || |||| || ||||| || || || || || || || Sbjct 354158 TCAATGGTATCGGATGACTCGACTTCCAGAGTAATGGTCTTTCCAGTGAGGGTCTTGACG 354099 Query 46583 AAGATTTGCAT 46593 ||||||||||| Sbjct 354098 AAGATTTGCAT 354088 >seq274 Length=55280 Score = 111 bits (122), Expect = 2e-19 Identities = 133/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| ||||||||||| ||||| || | || ||||||||||| || ||||| | Sbjct 12357 CCTTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGA 12298 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 ||| ||||| ||||| | || | || |||||||||| |||||| ||||| | Sbjct 12297 TCAGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 12238 Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583 | | ||||| || || || || | |||||||| ||||||||||| || || || | Sbjct 12237 CGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 12178 Query 46584 A 46584 | Sbjct 12177 A 12177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565212356640720