Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20hostae_20[genbank_20GCA_5F002234235.1_202017-07-27] 3,686 sequences; 54,581,980 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq413 232 8e-56 seq3086 102 1e-16 >seq413 Length=406985 Score = 232 bits (256), Expect = 8e-56 Identities = 459/678 (68%), Gaps = 6/678 (1%) Strand=Plus/Plus Query 7408 CTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTC 7467 ||| |||||||| || ||||| | | |||||| | || | ||||| || || Sbjct 398789 CTTGTGTTTACGCTTGAACTCATTAACGAAGTGGTTGACCAGACGGTTGTCGAAGTCCTC 398848 Query 7468 ACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTT 7527 |||||||||||| || || || || || | ||||| || |||||||| | |||||| | Sbjct 398849 ACCACCCAAGTGGGTGTCACCGGCAGTAGACTTGACCTCGAAGATACCCTCCTCAATGGT 398908 Query 7528 TAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTC 7587 | | || ||||| || ||||||||||| || || || ||||| ||||| || | Sbjct 398909 AAGGAGAGACACATCGAAGGTACCACCACCAAGATCGAAGATGAGGACGTTGCGCTCACC 398968 Query 7588 GTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACG 7647 || ||||| ||||||||||| || || || || || || || || ||||| || || Sbjct 398969 CTCAACCTTCTTGTCGAGACCGTAGGCAATGGCGGCAGCAGTAGGCTCGTTAATGATTCG 399028 Query 7648 AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTT 7707 ||| ||| || || || || | ||||| || || ||||| || || |||||||| Sbjct 399029 GAGAACGTTGAGACCGGCGATGAGACCAGCATCCTTGGTGGCTTGACGCTGAGAATCGTT 399088 Query 7708 AAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGC 7767 |||||||| ||||| || || || |||| |||| ||| || || || || || || Sbjct 399089 GAAGTAGGCGGGGACGGTAACAACAGCGTTGTTGACAGTCTCGCCAAGGTAAGACTCAGC 399148 Query 7768 GATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGT 7827 | | || ||| ||||| || | ||| | || ||||| || | | || || || Sbjct 399149 GGTCTCACGCATCTTGGTGAGGATCATGGCGGAGATCTCCTCGGGGGTGAAGGTCTTGGT 399208 Query 7828 TTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATA 7887 || || || || ||||| || || | ||| ||| || | | || | ||| | Sbjct 399209 CTCGCCCTTGAACTCAACCTCGATAACGGGCTTA---CCACCCTTGTCGACGATCTTGAA 399265 Query 7888 CGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACG 7947 | | | ||||| ||| | ||||||| | || | ||||| | ||||| | || Sbjct 399266 GGGGAAGTGCTTCATGTCGGCCTGGACCTCAGGATCGGCGAACTTGCGACCGATCAATCG 399325 Query 7948 CTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCC 8007 ||| || || || || ||||| | ||||||||| || ||||||||| || || || || Sbjct 399326 CTTGGCGTCGAAGACAGTGTTCTGGGGGTTCATAGCGACTTGGTTCTTGGCGGCATCACC 399385 Query 8008 GATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTG 8067 || ||||| || | || || || ||||| | || ||||| ||||| || || || Sbjct 399386 AATCAGACGCTC---GGTGTCGGTGAAACCGACGAATGAGGGGGTAGTTCGGTTACCCTG 399442 Query 8068 GTCGTTCGCAATAATTTC 8085 |||||| || || || || Sbjct 399443 GTCGTTGGCGATGATATC 399460 Score = 123 bits (136), Expect = 3e-23 Identities = 525/830 (63%), Gaps = 21/830 (3%) Strand=Plus/Plus Query 6569 TCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGAT 6628 ||||| || || || ||||| || ||||| | | ||| || || || || || || Sbjct 397746 TCATCCTCCTCCTTGTACTTCTCAGCATCGTTAAGCATGCGCTCGATCTCCTCCTTGGAC 397805 Query 6629 AATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCA 6688 | | ||||| ||||| ||||| |||||| | ||| || || | | |||| || | Sbjct 397806 AGGCGGCCCTTGTCATTGGTAATGACAATCTTGTTGGACTTGCCAGTGCCCTTCTCGACG 397865 Query 6689 GCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTA 6748 || || |||| ||||| || ||||||| |||||| | || | ||| || || | Sbjct 397866 GCGGAGACGTTCATGATACCGTTGGCATCAAGATCGAAGGTGACCTCAATCTGGGGAACA 397925 Query 6749 CCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTC 6808 || | || || | || || || || | || || |||| | | |||| ||| | Sbjct 397926 CCACGGGGGGCAGGGGGGATGCCAGTGAGCTCGAACTTACCCATGAGGTTGTTGTCCTTG 397985 Query 6809 GCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCC 6868 | || ||| ||||| || ||||| | || || |||| || || || Sbjct 397986 GTGCGCTGACGCTCACCCTCGTAGACCTGGATAAGAACACCAGGCTGGTTGTCGGAGAAG 398045 Query 6869 GTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTC 6928 || ||||| | | ||||| | || || || || || | || || | | |||| Sbjct 398046 GTGGAGAAAACCTCGGACTTCTTGGTGGGGATGGTGGTGTTGCGGGGGATGAGCTTGGTC 398105 Query 6929 ATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGG 6988 || |||||||| || |||| || ||||| ||||| | || || ||| | |||| Sbjct 398106 ATCATACCACCAGCGGTCTCGATACCGAGAGAGAGAGGGGCGACATC---GAGAAGCAGG 398162 Query 6989 -TCTTGAACAGATTCGTTCCCTT-----------CACCCGTTAAGATGGCGGCTTGGACC 7036 ||| | || || |||| |||| | | || ||||| ||||| Sbjct 398163 ATCTCG------TTGGTGGCCTTGCTGGAAGTGTCACCGGAGAGAATCGCGGCCTGGACG 398216 Query 7037 GTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTA 7096 | || ||||| || || |||||||||||||| || | || || | || || ||||| Sbjct 398217 GCGGCACCGTAGGCAACAGCCTCATCGGGGTTGATGGACTTGTTGGGCTCCTTTCCGTTG 398276 Query 7097 AAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACG 7156 || || || | | | | || | ||||| || || || |||||||| | ||| Sbjct 398277 AAGTAGTCGGTGATGAGCTTCTGGACACGGGGGATACGGGTAGAGCCACCGACGAGGACG 398336 Query 7157 ATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCC 7216 || || | || || || |||||||| | ||| ||| ||||| || | Sbjct 398337 ATCTCGTGGACAAGGGACTTGTCGATCTTAGCGTCGGTAAGGACACGGTCGACGGGCTGG 398396 Query 7217 ATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTA 7276 ||| ||||| | ||| || || ||||| ||||| |||||||| ||||| || Sbjct 398397 ATAGTGGATCGGAAGAGATCCTGGCAGAGCTCCTCGAAACGAGCACGGGTGATGGAGGTG 398456 Query 7277 TAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGAT 7336 ||||| || | || ||| | | || || || || |||| || || || | ||||| Sbjct 398457 TAGAAGTCGATACCCTCGAAGAGAGAGTCGATCTCGATGGAGGTCTGAGCGGAAGAAGAG 398516 Query 7337 AACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACG 7386 | |||||||| || ||||| || || ||||| | ||| || || || || Sbjct 398517 AGGGTTCGCTTGGCACGCTCGCAAGCAGTTCGGAGACGTCGCAGAGCGCG 398566 >seq3086 Length=122601 Score = 102 bits (112), Expect = 1e-16 Identities = 171/244 (70%), Gaps = 5/244 (2%) Strand=Plus/Minus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 ||||||||| |||||||| | || ||||| || ||||| || ||| || |||||||| Sbjct 10080 ATCGAAATCCTCACCACCGAGATGGGTATCACCAGCGGTAGCCAGGACCTCGAAGATACC 10021 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 | |||||| | | || ||||| || ||||||||||| || || | || | Sbjct 10020 GTCATCAATGGAGAGAAGGGAGACATCGAAGGTACCACCACCGAGATCGTA---GACGAT 9964 Query 7576 GTTCGTATCG-TCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTT 7634 | || | ||| || | | | |||| || |||||||| |||||||| || || || || | Sbjct 9963 GATC-TGTCGCTCACCGTCGGTCTTGTCAAGACCGTAGGCGATAGCGGCGGCGGTGGGCT 9905 Query 7635 CATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTC 7694 | |||| || || ||| ||| || || ||||| | | ||||| || || || |||| Sbjct 9904 CGTTAACGATTCGGAGAACGTTGAGACCGGCAATGATACCGGCATCCTTGGTGGCCTGTC 9845 Query 7695 GTTG 7698 | || Sbjct 9844 GCTG 9841 Score = 86.0 bits (94), Expect = 8e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 7704 CGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATT 7763 |||| |||||||| ||||| || ||||| |||| ||||| ||||||||||| || | Sbjct 9782 CGTTGAAGTAGGCAGGGACGGTAACGACGGCGTGGGTGACCTTCTTACCGAGGTAGCCCT 9723 Query 7764 CCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTT 7823 | |||| || ||||| ||| ||||||||| | || ||||| |||| | ||||| | Sbjct 9722 CAGCGACCTCCTTCATCTTGCCAAGAACCATAGCAGAGATCTCCTCAGGAGTGAACTGCT 9663 Query 7824 TC 7825 || Sbjct 9662 TC 9661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635103536256240