Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20hostae_20[genbank_20GCA_5F002234235.1_202017-07-27] 3,686 sequences; 54,581,980 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq3012 223 4e-53 seq2855 140 4e-28 >seq3012 Length=424931 Score = 223 bits (246), Expect = 4e-53 Identities = 1136/1788 (64%), Gaps = 51/1788 (3%) Strand=Plus/Minus Query 111611 CCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGT 111670 ||| ||| ||||| ||||||| || | | |||||| || || ||||| || || Sbjct 44120 CCCTCAGCACATGATCATGCGTGTGTCTGTTGGTATCTGGGGTGATGATATCGAGCGAGT 44061 Query 111671 TTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTT 111730 ||||||||||| || ||||||| | | || | || || | || || ||||| Sbjct 44060 CTTGGAGACATATAACCTGATGTCCAGCAAATTCTTTACACATGCCTCTCCCACACTCTT 44001 Query 111731 CAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGA 111790 |||||||||||| || |||||| |||| ||| ||| | ||| | ||||| || Sbjct 44000 CAACGCTGGTACCCCTCAGCCCCAATTGTCATCTTGCTTCTTGGTTGATATGAAGGACGA 43941 Query 111791 TTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGG 111850 || | ||||| |||| ||||||| |||||| ||||| ||| |||||| Sbjct 43940 CAGTATTGAGGGCATCTACGATACTCTCAAGACCTGTGCCATGATCTCCAAGATGGCTGG 43881 Query 111851 TGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTAT-TAGA-GGTACA 111908 ||||| || || || | || | || | || | | ||| || | | ||||| Sbjct 43880 AGGTATTGGTCTGAACGTGCACCGTATCCGTGCTACT--GGCTCCTACATCGCCGGTACC 43823 Query 111909 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 111968 || ||| ||| | || || |||| |||||||| || || ||| ||| || |||||| Sbjct 43822 AACGGTACATCCAACGGCGTTGTTCCTATGCTTCGTGTCTTCAACAACACTGCTCGCTAT 43763 Query 111969 GTAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGG 112022 || | || | ||| ||| | | || || | || |||| || ||||| ||| Sbjct 43762 GTCGATCAGGGTGGCAACAAGCGACCC---GGTGCTTTTGCCATCTACCTCGAGCCTTGG 43706 Query 112023 CACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGG 112082 ||| | ||| || | ||||||||||| | || ||||| ||| | ||||||| || Sbjct 43705 CACTCTGATGTCTTCGAGTTCCTTGATCTCCGAAAGAACCACGGTAAAGAGGAGGTCCGT 43646 Query 112083 TGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG 112142 ||| || || ||| ||| || ||||| || ||||| || |||||| | ||||| || Sbjct 43645 GCCCGTGACCTGTTCCTCGCCCTTTGGATCCCTGATCTTTTTATGAAGCGTGTTGAAAAG 43586 Query 112143 AGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGT 112202 | || | ||| | || | || || || || || || ||| |||| | ||| Sbjct 43585 AACGGTGACTGGACACTGATGTGCCCCAACGAGTGCCCTGGCCTCGCCGACTGCTACGGT 43526 Query 112203 GAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGC--GACGG 112260 |||||||| || || || ||| |||||| || |||| | | | | | | || ||| Sbjct 43525 GAGGAGTTCGAGGCTCTGTACGAAAAGTATGA-GAAGGAGGGCAAGGGTC-GCAAGACTA 43468 Query 112261 TGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCA 112319 | | || | || | | ||| | || ||||| || |||| || |||||||| | || Sbjct 43467 T-CAAGGCTCAGAAGCTTTGGTATGCCATTCTTGAGGCTCAGACTGAGACTGGAAACCCT 43409 Query 112320 TATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATC 112379 | ||||| ||||| || ||||| |||| ||||| || |||||||| | || ||| Sbjct 43408 TTCATGCTCTACAAGGATGCCTGCAACCGCAAGAGCAACCAAAAGAACCTCGGCACCATC 43349 Query 112380 AAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTG 112439 || || ||||| || || ||||| | || | | | | || ||| ||||| Sbjct 43348 CGAAGCTCTAACCTGTGCACTGAAATTATCGAGTATTGTGCCCCTGACGAGGTCGCTGTC 43289 Query 112440 TGTAACCTCGCATCAATCGCTCTCCC---------CAAGTATG-TGGATCCAGAGACAAA 112489 || ||||| || || | ||||| || ||| || | || || | | | Sbjct 43288 TGCAACCTTGCCTCTCTGGCTCTGCCTTCCTTCATCAACTACGATGAGGCCTG---CTAC 43232 Query 112490 GACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAG 112549 ||| || | | || | ||||| || | | ||| | ||||| |||| Sbjct 43231 GAC--TTCA-----AGAAGTTGCACGAGGTCAGTCAGGTTGTTATTCGCAACCTGAACAA 43179 Query 112550 AGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCG 112609 | || || || ||||| || | ||||| || || ||| | ||||| Sbjct 43178 GATCATCGACGTGAACCACTACCCTGTCCCGGAGGCTCGCAACAGCAACATGCGCCACCG 43119 Query 112610 TCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATT-CTTTGTCGCCACGCAT 112668 || |||||||||||||| || || || || |||| ||| || || || ||| | | Sbjct 43118 ACCCATTGGTCTCGGTGTTCAGGGCCTTGCTGATGCTTTCCTTGCTCTG-CGCATGCCCT 43060 Query 112669 TTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCG 112728 | || || ||| || || |||| || || || ||||| || || ||||| | Sbjct 43059 TCGAGTCACCCGAGGCTCGTGAGCTCAACAAGCAGATCTTCGAGACCATCTACCACGCTG 43000 Query 112729 CTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTT 112788 | || || | || |||| ||| || ||||| || ||||| |||| | Sbjct 42999 CCCTCACTGCCTCCGTGCAGCTGGCCAAGGAGGAGGGTCCCTACTCCACCTTCAAGGGCT 42940 Query 112789 CTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACT 112848 |||| || || | || | || || || || |||||| | | || || | || Sbjct 42939 CTCCCGCCTCTGAGGGTATCCTCCAGTTCGACATGTGGAACGTCAAGCCCTCTGACCTCT 42880 Query 112849 ACGACTGGGACGCTC-TCAAG-GAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTT 112906 |||||||| ||| || || | | | ||||| | ||| | ||||||||||| | Sbjct 42879 GGGACTGGGAGACTCTTCGAGAGGAAG--TCAAGACACACGGTATCCGTAACAGTCTGCT 42822 Query 112907 GATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGA 112966 | || || ||||| || ||| ||| | || || |||| || || || ||||| || Sbjct 42821 CCTTGCTCCTATGCCTACTGCCAGTACCTCTCAGATTCTGGGCAACAACGAGTGCTTCGA 42762 Query 112967 ACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAA 113026 |||||||| | |||||||| | | || | |||||| || ||||| | ||||||| Sbjct 42761 GCCCTACACCTCCAACATCTACCAGCGACGTGTCCTCGCTGGTGAGTTCCAGGTTGTCAA 42702 Query 113027 CAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCT 113086 | || | | ||||| || || ||||| |||||| | | ||||||| | | Sbjct 42701 CCCCTGGCTGCTCAAGGACCTTGTCGACATGGGTCTGTGGTCCGATGCTATGAAGAACCG 42642 Query 113087 CATGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAAATTAAGAA 113146 ||| | | | |||||||||||| || ||| | || || | || | ||| Sbjct 42641 CATCATTGCTGAGAATGGTTCCATTCAGAACATTCCCAACATCCCTGCCGATGTCAAGGC 42582 Query 113147 GTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCG 113206 |||| || |||||||| || | | ||| || | |||||||| || || Sbjct 42581 TCTGTATAAGACTGTTTGGGAGATTTCTCAGCGCCAGGTCGTTCAGATGGCCGCTGACCG 42522 Query 113207 TGGTCGCTTCATTGATCAAAGTCAAAGT--ATGAATCTATTCATGGAAAGTCCAACGATG 113264 ||| ||||||||||| |||| ||| |||| | |||| | || |||||| Sbjct 42521 AGGTGCCTTCATTGATC--AGTCCCAGTCACTGAACATCCACATGAAGGACCCCACGATG 42464 Query 113265 TCCAAGCTCTCTTCTATGCACATGTACA-GTTGGAAGAAGGGTCTCAAAACGGGGATGTA 113323 |||| || | ||||||| | | || | |||||| |||||||| || || ||||| Sbjct 42463 GGCAAGATCACCAGTATGCAC-TTTGCAGGCTGGAAGCTTGGTCTCAAGACCGGCATGTA 42405 Query 113324 TTACCTCCGATCTAAGGCAAAGGCGCGCCCAATTCAGTTCAGTCTTGA 113371 ||||| || | |||| || || |||||||||| | |||| Sbjct 42404 CTACCTTCGCACACAGGCTGCTGCTGCTCCTATTCAGTTCACTGTTGA 42357 >seq2855 Length=139020 Score = 140 bits (154), Expect = 4e-28 Identities = 351/522 (67%), Gaps = 11/522 (2%) Strand=Plus/Minus Query 101817 TGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGACTC---TAAAT 101873 |||||||| || ||| | |||||||| |||||| | |||| ||||| | | | | | Sbjct 126335 TGGACTGCCGAGGAGATTGATCTCTCCAAGGATCTCCACGACTGGAACAACCGCCTGACT 126276 Query 101874 GAAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGGTCCGATGGAATT 101933 | |||| || ||| | ||||||| || ||||| |||| || ||||| ||| Sbjct 126275 GCCGATGAGCAGTTCTTCGTCTCTCACATCCTTGCCTTCTTCGCTGCCTCTGATGGTATT 126216 Query 101934 GTTTTTGAGAATATCAATAACAACTTTGCTGATGAGGTGCA-ATCCTCTGAAGCGAGATC 101992 || ||||| || | | || || ||||| || |||| | || || | | Sbjct 126215 GTCAACGAGAACCTCGTTGAGCGATTCAGTGGCGAGGTCCAGATCCCC-GAGGCTCGTTG 126157 Query 101993 TTTCTATGCGTATCAATGTCATAATGAA-ATGGTGCATGGGGAGACATACAGTAAACTCA 102051 |||||| | | || | |||| ||| | | | || ||||| ||| |||| Sbjct 126156 TTTCTACGGCT-TCCAGATCATGATGGAGAACATCCACTCTGAGACCTACTCCCTTCTCA 126098 Query 102052 TAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGC-AGCTCTTTGAAGCCATCCAAACA 102110 | |||| || || ||||| || || ||| | | ||||| | ||||| | || Sbjct 126097 TTGACACCTACATCAAGGAGCCCGCCCAGC-GAACCTACCTCTTCAACGCCATTGAGACC 126039 Query 102111 GTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTCGCG 102169 |||| || || | |||||| || || ||||| || ||| | | | || | | | Sbjct 126038 ATTCCTTGCATCCGAAAGAAGGCCGACTGGGCCATCCGATGGATCCAGGATAAGGACTCC 125979 Query 102170 TTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTC 102229 | ||||||| |||| ||| | || || || ||||||||||||||||||| ||| | Sbjct 125978 T-CCTTTGCCCAGCGTCTCGTTGCCTTCGCTGCTGTTGAGGGTATCTTCTTCAGCGGTGC 125920 Query 102230 CTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAA 102289 ||| | |||| | |||||||||||||| ||||||||||| || || ||||||||| Sbjct 125919 CTTTGCCTCTATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGCCTGACCTTCTCCAA 125860 Query 102290 CGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 |||||| ||||||||||| ||||| |||||| || ||||| Sbjct 125859 CGAGCTCATCTCTCGTGATGAGGGTCTCCACACTGACTTTGC 125818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620713799293920