Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20hostae_20[genbank_20GCA_5F002234235.1_202017-07-27] 3,686 sequences; 54,581,980 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq3012 235 6e-57 seq443 89.7 6e-13 >seq3012 Length=424931 Score = 235 bits (260), Expect = 6e-57 Identities = 1088/1702 (64%), Gaps = 61/1702 (4%) Strand=Plus/Plus Query 109399 GCCTTCGAGCGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATA-TG 109457 |||| | |||||| || ||||| || || ||||||||| |||||| || | || | || Sbjct 42387 GCCTGTGTGCGAAGGTAGTACATGCCGGTCTTGAGACCAAGCTTCCA-GCCTGCAAAGTG 42445 Query 109458 CATTGAAGAGAGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTG 109517 ||| | || ||| | || || || ||| | ||||| ||||| ||||| Sbjct 42446 CATACTGGTGATCTTGCCCATCGTGGGGTCCTTCATGTGGATGTTCAGTGACTGGGACTG 42505 Query 109518 ATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCT----AATTT 109573 ||| ||||| ||| || ||||| ||||| | | || | | ||| ||| | Sbjct 42506 ATCAATGAAGGCACCTCGGTCAGCGGCCATCTGAACGA----CCTGGCGCTGAGAAATCT 42561 Query 109574 CCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAG 109633 |||| |||||||| |||| | ||||| ||| | || |||| ||||| ||||| | Sbjct 42562 CCCAAACAGTCTTATACAGAGCCTTGACATCGGCAGGGATGTTGGGAATGTTCTGAATGG 42621 Query 109634 AGCCAC---CAGCCTTCACCATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTT 109690 | ||| |||| | | || | | |||||| | | ||||| ||||| | | | Sbjct 42622 AACCATTCTCAGCAATGA---TGCGGTTCTTCATAGCATCGGACCACAGACCCA---TGT 42675 Query 109691 TGAGATCGTCAACAAGATGCTTG---TTGACCACGACAAATTCACCAGCAAGTGTGCGTC 109747 || | ||| || || | ||||| || || |||||||| || |||| Sbjct 42676 CGACAAGGTCCTTGAGCAGCCAGGGGTTGACAACCTGGAACTCACCAGCGAGGACACGTC 42735 Query 109748 GGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAG 109807 | |||||||||| | |||||||| ||||| ||||| |||||||| || || || | | Sbjct 42736 GCTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGAGAGG 42795 Query 109808 TGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCC 109867 | || || ||||| ||||| | ||| |||||||| |||| ||| | ||||| || Sbjct 42796 TACTGGCAGTAGGCATAGGAGCAAGGAGCAGACTGTTACGGATACCGTGTGTCTTGACTT 42855 Query 109868 GCTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTCTCACCATCCCACATAT 109927 ||| || | | ||||| || | | || | || | | |||||| | Sbjct 42856 CCTCTCGAAGAGTCTCCCAGTCCCAGAGGTCAGAG------GGCTTGACGTTCCACATGT 42909 Query 109928 CTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAA 109987 | || || | |||||||| || ||||| |||||||| | ||| | ||||| Sbjct 42910 CGAACTGGAGGATACCCTCAGAGGCGGGAGAGCCCTTGAAGGTGGAGTAGGGACCCTCCT 42969 Query 109988 CCTCGGCCAACTCGGATGAAGCCTCT-AGTGCCGCATGATACATAGTCTCAAAAATATGA 110046 ||| ||||| || | | | || | | || || || || || || ||||| || || || Sbjct 42970 CCTTGGCCAGCT-GCACGGAGGCAGTGAGGGCAGCGTGGTAGATGGTCTCGAAGATCTGC 43028 Query 110047 GCATTCATGAGG---CGAGACTCTTCACAGTCGAAGGGAAGACCACAAAG-AATAAACAC 110102 || |||| |||| ||| | |||||||| | | || || || || | Sbjct 43029 ---TTGTTGAGCTCACGAGCCTCGGGTGACTCGAAGGGCATGCG-CAGAGCAAGGAAAGC 43084 Query 110103 ATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGC 110162 ||| || || ||||||||||||||||||||||| || || |||||| | ||||| Sbjct 43085 ATCAGCAAGGCCCTGAACACCGAGACCAATGGGTCGGTGGCGCATGTTGCTGTTGCGAGC 43144 Query 110163 AGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTT 110222 || ||||| ||| |||||||| | || || || | ||| || Sbjct 43145 CTCCGGGACAGGGTAGTGGTTCACGTCGATGATCTTGTTCAGGTTGCGAATAACAACCTG 43204 Query 110223 CGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTA-TTGACATATTTGG 110281 ||| || || | || | | | ||| | | | || | || |||| | | Sbjct 43205 ACTGACCTCGTGCAACTTCTTGAAGTCGTA-GCAGGCCTCATCGTAGTTGATGAAGGAAG 43263 Query 110282 GGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAA 110341 | ||||| | ||| ||||| ||||| |||| |||||| | | || || | || Sbjct 43264 GCAGAGCCAGAGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGGGCACAATACTCGATAA 43323 Query 110342 TTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGT 110401 |||| || |||| ||| || || ||| || | |||||| || || ||| || Sbjct 43324 TTTCAGTGCACAGGTTAGAGCTTCGGATGGTGCCGAGGTTCTTTTGGTTGCTCTTGCGGT 43383 Query 110402 TGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGG 110461 |||| |||||||| ||||||||| | ||| | ||||| || ||||| | || ||||||| Sbjct 43384 TGCAGGCATCCTTGTAGAGCATGAAAGGGTTTCCAGTCTCAGTCTGAGCCTCAAGAATGG 43443 Query 110462 CCTTCCATA-CATCGGCGGCGGGGACAGT--TGCGTTAGCGAGACCTTCCTCCTCGTACT 110518 | | ||| | | || | | | | | ||| |||| | | || |||| ||| |||| Sbjct 43444 CATACCAAAGCTTCTGAGCCTTG-ATAGTCTTGCG--ACCCTTGCCCTCCTTCTCATACT 43500 Query 110519 TGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGG 110578 | ||||| |||| || |||| ||||| || | || || || || || Sbjct 43501 TTTCGTACAGAGCCTCGAACTCCTCACCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGG 43560 Query 110579 GACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCC 110638 | || | || | ||| | || || ||||| | |||||| || || ||||| |||| Sbjct 43561 GGCACATCAGTGTCCAGTCACCGTTCTTTTCAACACGCTTCATAAAAAGATCAGGGATCC 43620 Query 110639 ACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCT 110698 | | || ||| ||||||||| ||| |||| || | ||| ||||| || || | Sbjct 43621 AAAGGGCGAGGAACAGGTCACGGGCACGGACCTCCTCTTTACCGTGGTTCTTTCGGAGAT 43680 Query 110699 CCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGAT------GGATC 110752 | | || || | || ||| |||||||| || ||||| |||| || | || || Sbjct 43681 CAAGGAACTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTC 43740 Query 110753 CCTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAG 110812 ||| | |||| || | |||||||| || ||| |||||||| | ||||||| Sbjct 43741 GCTTGTTGCCACCC---TGATCGACATAGCGAGCAGTGTTGTTGAAGACACGAAGCATAG 43797 Query 110813 GAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGT 110872 ||| || || | |||| ||| || ||||| || ||| | | ||||| || Sbjct 43798 GAACAACGCCGTTGGATGTACCGTTGGTACCGGCGATGTAGGAGCCAGTAGCACGGATAC 43857 Query 110873 CGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACAC-TCTGTGAGT 110931 ||| | | || ||||||||| || ||| ||| || ||||| ||| |||| Sbjct 43858 GGTGCACGTTCAGACCAATACCTCCAGCCATCTTGGAGATCATGGCACAGGTCT-TGAGA 43916 Query 110932 GTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATC 110991 ||| | || || || ||||| || |||| | ||| | |||||||| |||| Sbjct 43917 GTATCGTAGATGCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAAT 43976 Query 110992 TGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTG- 111050 || || |||| || || || ||||||||||| || | ||||| || | ||| ||| Sbjct 43977 TGGGGCTGAGGGGTACCAGCGTTGAAGAGTGTGGGAGAGGCATG--TGTAAAGAATTTGC 44034 Query 111051 -GGACATCTTGTTGTATGTGTC 111071 ||||||| ||| ||||| || Sbjct 44035 TGGACATCAGGTTATATGTCTC 44056 >seq443 Length=64285 Score = 89.7 bits (98), Expect = 6e-13 Identities = 218/326 (67%), Gaps = 16/326 (5%) Strand=Plus/Minus Query 11592 GAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGG 11651 |||||| ||||| || ||||||| |||||| | || ||| |||||||||||| Sbjct 10436 GAAACCATCCATCTCAGTGAGAATCTGGTTCAGAGTTGCTTCCCGCTCATCGTTGCCAC- 10378 Query 11652 CATACCACCTGCCGAACGCTTCTTACCGACA---------GCGTCAATCTCATCGATGAA 11702 || | | || ||| || || || | || ||||||||||| || ||||| Sbjct 10377 CAAATCCCCGGCC--ACTCTCCTGTCGCGCACGTCCAATTGCGTCAATCTCGTCAATGAA 10320 Query 11703 TACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCC 11762 | ||| || || ||| |||| | | |||| || || | ||||| | || Sbjct 10319 GATGATGCAAGGGGCGTTCTTACGTCCTTCGGCGAACAGGTCTCTCACACGTGAAGGGCC 10260 Query 11763 AACACCTACGAACATCTCAACGAAGTTTG--CGGCAGAACACTGAATGAAGGGAACATTA 11820 ||||| || ||||| |||||||| | | | || | ||||||| |||||| || Sbjct 10259 GACACCGACAAACATTTCAACGAATTCAGAACCGCTCA-CACTGAA-GAAGGGTACTCCT 10202 Query 11821 GACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGA 11880 ||||| || || |||| || || | |||||||| |||||||| | |||||| | Sbjct 10201 GACTCGCCGGCCGTGGCCTTGGCAAGCAATGTCTTACCAGTACCAGGAGGACCAGCTAAG 10142 Query 11881 AGGGCGCCACGGGGGATCTTGGCACC 11906 | || || || |||||||||||||| Sbjct 10141 ATAGCACCTCGAGGGATCTTGGCACC 10116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588948862930800