Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20hostae_20[genbank_20GCA_5F002234235.1_202017-07-27] 3,686 sequences; 54,581,980 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq228 105 8e-18 >seq228 Length=86997 Score = 105 bits (116), Expect = 8e-18 Identities = 267/404 (66%), Gaps = 3/404 (1%) Strand=Plus/Plus Query 154704 GATAAAAGAAATGTATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCTAGTGCT 154763 ||||| |||| || || | || || | || || || || || || |||||| ||| Sbjct 59939 GATAAGCGAAAGGTCTGCCTTATCCCTGTTTCTGCTCACGGTACCAACCCTGCTTCTGCC 59998 Query 154764 GTCATGGCAGGGATGAAAGTTGTAGGTGTCAAGTGTGATG--ATGA-TGGTAACATAGAC 154820 | |||||| || ||||| ||||| |||||||||||| | | || ||||||| | || Sbjct 59999 GCCATGGCTGGTATGAAGGTTGTCACTGTCAAGTGTGACGGCAAGACTGGTAACCTGGAT 60058 Query 154821 ATCAAAGATCTAGAGAAGAAAGCAATCATGAATACATTTGAACTGTCATGTATTATGATT 154880 ||| | ||||| || || ||| | || | ||| || | ||| ||| || Sbjct 60059 ATCGAGGATCTTAAGGCCAAGTGTGTCAAGCATGCTGATGAGCTCGCTGCTATCATGGTT 60118 Query 154881 ACATACCCATCTACACATGGTGTATTTGAAACTAACATTAGACAGATATGTAAGATCGTT 154940 || ||||| ||||| ||||| || || || | || | || | ||| | | || Sbjct 60119 ACTTACCCCTCTACTTTCGGTGTCTTCGAGCCTGAGATCAAGCAAGTCTGTGATCTTGTC 60178 Query 154941 CATGACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACAGGTAGGACTA 155000 || || |||| |||| || || | || || || || | || || ||| | || || Sbjct 60179 CACGAGCATGGCGGTCTCGTCTACATGGACGGTGCCAACATGAACGCCCAGATCGGTCTC 60238 Query 155001 GCAAAACCATGTGAGTATGGTGCAGATGTATGTCATCTAAACTTACATAAAACATTCTGT 155060 | || | || ||||| ||||| || ||||| ||| | || || || |||||| Sbjct 60239 TGCAGCCCCGGCGACATCGGTGCTGATGTCTGCCATCTCAACCTCCACAAGACCTTCTGT 60298 Query 155061 ATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGTGT 155104 ||||| || || ||||| ||||| || || || ||||| | ||| Sbjct 60299 ATTCCCCACGGTGGTGGTGGTCCCGGTGTTGGCCCTATTGCTGT 60342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579186112770240