Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20hostae_20[genbank_20GCA_5F002234235.1_202017-07-27] 3,686 sequences; 54,581,980 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq228 123 3e-23 >seq228 Length=86997 Score = 123 bits (136), Expect = 3e-23 Identities = 271/404 (67%), Gaps = 3/404 (1%) Strand=Plus/Plus Query 159379 GATAAAAGAAATGTATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCATCAGCA 159438 ||||| |||| || || | || || | || || || || || || ||||| || || Sbjct 59939 GATAAGCGAAAGGTCTGCCTTATCCCTGTTTCTGCTCACGGTACCAACCCTGCTTCTGCC 59998 Query 159439 GTGATGGCAGGGATGAAAGTTGTAGGTGTCAAGTGTGATG--ATGA-TGGCAACATAGAC 159495 | ||||| || ||||| ||||| |||||||||||| | | || ||| ||| | || Sbjct 59999 GCCATGGCTGGTATGAAGGTTGTCACTGTCAAGTGTGACGGCAAGACTGGTAACCTGGAT 60058 Query 159496 ATCAAAGATCTAGAGAAGAAAGCAATCATGAATACATTTGAACTGTCATGTATTATGATT 159555 ||| | ||||| || || ||| | || | ||| || | ||| ||| || Sbjct 60059 ATCGAGGATCTTAAGGCCAAGTGTGTCAAGCATGCTGATGAGCTCGCTGCTATCATGGTT 60118 Query 159556 ACATATCCATCTACACATGGTGTATTTGAAACAAACATCAGACAGATATGTAAGATTGTT 159615 || || || ||||| ||||| || || | | |||| || | ||| | |||| Sbjct 60119 ACTTACCCCTCTACTTTCGGTGTCTTCGAGCCTGAGATCAAGCAAGTCTGTGATCTTGTC 60178 Query 159616 CATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTAGGTCTA 159675 || ||| |||| |||| || || | || ||||| || | || || ||| | ||||| Sbjct 60179 CACGAGCATGGCGGTCTCGTCTACATGGACGGTGCCAACATGAACGCCCAGATCGGTCTC 60238 Query 159676 GCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGT 159735 | || | ||| ||||| ||||| || ||||| ||| | || ||||| |||||| Sbjct 60239 TGCAGCCCCGGCGACATCGGTGCTGATGTCTGCCATCTCAACCTCCACAAGACCTTCTGT 60298 Query 159736 ATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGT 159779 ||||| || || ||||| ||||| || || || ||||||| ||| Sbjct 60299 ATTCCCCACGGTGGTGGTGGTCCCGGTGTTGGCCCTATTGCTGT 60342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588024105540960