Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20hostae_20[genbank_20GCA_5F002234235.1_202017-07-27] 3,686 sequences; 54,581,980 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq3086 100 2e-15 seq2145 87.8 1e-11 >seq3086 Length=122601 Score = 100 bits (110), Expect = 2e-15 Identities = 127/175 (73%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 550004 GATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATT 550063 ||| | ||||||||||| || ||||| ||||| ||| || || || || |||||| | Sbjct 9305 GATCTTGGAACCACATACAGCTGTGTCGGTGTGATGCAGAAGGGCAAGGTCGAAATTCTC 9364 Query 550064 GCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACTGAACAT 550123 | ||| ||||| |||||| ||| ||||| ||||| || | ||||| ||| ||| | | Sbjct 9365 GTCAACGATCAGGGTAACCGAATCACTCCCTCTTACGTCGCCTTCACCGAAGATGAGCGT 9424 Query 550124 TTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACTATTT 550178 || ||||| || || || || | || || | | ||| || || || ||||||| Sbjct 9425 TTGGTTGGAGACGCCGCCAAGAACCAGGCTGCCGCTAACCCCACGAACACTATTT 9479 >seq2145 Length=460897 Score = 87.8 bits (96), Expect = 1e-11 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCT 563315 ||| ||||| || |||||||||||| ||| || ||| ||||| || || || |||| Sbjct 354078 GAGGCGGAGGACGAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCGGCGAGGGTTCG 354019 Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375 || |||||||| || || ||||| || || | |||||||||||||| || || || Sbjct 354018 GCCGTCCTCAAGTTGCTTGCCAGCAAAGATCAGGCGCTGCTGATCAGGAGGGATGCCCTC 353959 Query 563376 TTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGT-ACATTCGAGAG 563434 || || || || ||| || || || || || || | ||| | | ||||||| Sbjct 353958 CTTGTCCTGGATCTTTGACTTGACATTGTCGATAGTGTC-GGATGACTCAACCTCGAGAG 353900 Query 563435 TAACAGTTTTACCAGTAAGAGTTTTAACGA 563464 | | ||| || ||||| || || || |||| Sbjct 353899 TGATAGTCTTGCCAGTGAGGGTCTTGACGA 353870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029101067696140