Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20hostae_20[genbank_20GCA_5F002234235.1_202017-07-27] 3,686 sequences; 54,581,980 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq228 123 3e-23 >seq228 Length=86997 Score = 123 bits (136), Expect = 3e-23 Identities = 271/404 (67%), Gaps = 3/404 (1%) Strand=Plus/Minus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 ||| ||||||| || || || ||||| ||||| || || ||||||||||| ||||| || Sbjct 60342 ACAGCAATAGGGCCAACACCGGGACCACCACCACCGTGGGGAATACAGAAGGTCTTGTGG 60283 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCA 138302 | || ||||| || ||||| ||||| ||| | || | ||||| | ||| || Sbjct 60282 AGGTTGAGATGGCAGACATCAGCACCGATGTCGCCGGGGCTGCAGAGACCGATCTGGGCG 60223 Query 138303 TTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACATATC 138362 || | || ||||| || | || || |||| |||| || || || | | ||| | Sbjct 60222 TTCATGTTGGCACCGTCCATGTAGACGAGACCGCCATGCTCGTGGACAAGATCACAGACT 60163 Query 138363 TGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCATAATACATGAG 138422 || |||| | | || || ||||| ||| || || || |||| ||| ||| | | Sbjct 60162 TGCTTGATCTCAGGCTCGAAGACACCGAAAGTAGAGGGGTAAGTAACCATGATAGCAGCG 60103 Query 138423 AGTTCAAATGTATTCATGATTGCTTTCTTCTCTAGATCTTTGATGTCTATGTTGCCA-TC 138481 || ||| | || | ||| || || ||||| | ||| || | ||| ||| || Sbjct 60102 AGCTCATCAGCATGCTTGACACACTTGGCCTTAAGATCCTCGATATCCAGGTTACCAGTC 60043 Query 138482 AT--CATCACACTTGACACCTACAACTTTCATTCCTGCCATGACTGCACTAGCAGGATTA 138539 | | |||||||||||| ||||| ||||| || |||||| | ||| |||||| || Sbjct 60042 TTGCCGTCACACTTGACAGTGACAACCTTCATACCAGCCATGGCGGCAGAAGCAGGGTTG 59983 Query 138540 GTTCCATGTGCTGACTCTGGTATCAGACATACATTTCTTTTATC 138583 || || || || || | || || || || || |||| ||||| Sbjct 59982 GTACCGTGAGCAGAAACAGGGATAAGGCAGACCTTTCGCTTATC 59939 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/230 (68%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 139859 CATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCC 139918 ||| ||||| || || ||||| |||||||| | | ||| || ||||| || | || Sbjct 58585 CATAGCCTCGGCAGCAGCAGTGGCTTCATCGAGAACAGAGGCATTTGCGATGTCGAGGCC 58526 Query 139919 TGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATAT 139978 || | || ||||| || || ||| | |||| | || | | | ||||| || Sbjct 58525 AGTCAAATCGGTGATCAGAGTCTGGAAGTTGAGGAGAGACTGAAGACGACCCTGGCTGAT 58466 Query 139979 CTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTCAAGAACGTTTCGCTG 140038 ||||||||| ||||| || || || ||||| ||| ||||| |||||||| ||||| Sbjct 58465 CTCAGCTTGGTAGGGGGTATAGCTGGTATACCAGGCAGGGTTCTCGAGAACGTTGCGCTG 58406 Query 140039 TATGACTGGGGGTGTAATGGTTCCATAGTATCCTTGACCTAT--AAGACT 140086 ||||| | || || ||||||||||| || ||| || |||||| Sbjct 58405 AATGACAGCAGGAACAAGAGTTCCATAGTAACCAGCACCAATGAAAGACT 58356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578971722648720