Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20hostae_20[genbank_20GCA_5F002234235.1_202017-07-27] 3,686 sequences; 54,581,980 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq3012 194 5e-44 seq2855 145 2e-29 seq424 107 6e-18 seq3063 89.7 2e-12 seq3358 86.0 2e-11 >seq3012 Length=424931 Score = 194 bits (214), Expect = 5e-44 Identities = 578/880 (66%), Gaps = 19/880 (2%) Strand=Plus/Plus Query 155631 TATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTA 155690 || || | ||| ||| |||||||||||| || ||||||||| | ||||| ||||| Sbjct 43314 TACTCGATAATTTCAGTGCACAGGTTAGAGCTTCGGATGGTGCCGAGGTTCTTTTGGTTG 43373 Query 155691 GATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCG 155750 || | ||| || ||||||||||| || ||| | ||| |||| ||||| |||| || Sbjct 43374 CTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAAAGGGTTTCCAGTCTCAGTCTGAGCC 43433 Query 155751 TCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGAC 155810 || ||||| ||| || | | || || || |||| |||| ||| | Sbjct 43434 TCAAGAATGGCATACCAAAGCTTCTGAGCCTTGATAGTCTTGCGACCCTTGCCCTCCTTC 43493 Query 155811 TCATA--TTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGC 155868 ||||| |||| || | ||| | | | ||||||||||| || || || ||||||| Sbjct 43494 TCATACTTTTCGTACAGAGCCTC--GAACTCCTCACCGTAGCAGTCGGCGAGGCCAGGGC 43551 Query 155869 ACTTATCGGGGCAAAACAGCGACCA---AATTTTATTACCGATTACACGCTCCATAAATA 155925 ||| | |||||| | ||| | ||| | || || | | |||||| |||||| | Sbjct 43552 ACTCGTTGGGGCACATCAGTGTCCAGTCACCGTTCTTTTCAA---CACGCTTCATAAAAA 43608 Query 155926 CATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGAT 155985 |||| ||||| || ||| ||||| | || |||||| | ||||| | Sbjct 43609 GATCAGGGATCCAAAGGGCGAGGAACAGGTCACGGGCACGGACCTCCTCTTTACCGTGGT 43668 Query 155986 TCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAA 156045 |||| || || || | ||| || | ||||| || ||||| || || || |||| Sbjct 43669 TCTTTCGGAGATCAAGGAACTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAA 43728 Query 156046 AACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACAC 156102 || ||| | |||| ||||||||||| ||||| |||||||| || |||||||||| Sbjct 43729 AAGCACCGGGTCGCTTGTTGCCACCCTGATCGACATAGCGAGCAGTGTTGTTGAAGACAC 43788 Query 156103 CTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATG 156162 |||||||||| || || ||||| || || ||||| ||| || | || |||| | Sbjct 43789 GAAGCATAGGAACAACGCCGTTGGATGTACCGTTGGTACCGGCGATGTAGGAGCCAGTAG 43848 Query 156163 AGCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT-TTAGAAATTTGAGCGCAT 156221 || | | || | | || |||||||| || | |||| || || || || || Sbjct 43849 CACGGATACGGTGCACGTTCAGACCAATACCTCCAG-CCATCTTGGAGATCATGGCACAG 43907 Query 156222 TCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT-TGATAGTAGATAGCA 156280 ||| | ||||| | | || || |||||| || || | ||| | | ||| |||| Sbjct 43908 GTCTTGAGAGTATCGTAGATGCCCTCAATACTGTCGTCCTTCATATCAACCAAGA-AGCA 43966 Query 156281 CGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAA 156340 || ||||| || | || || ||||||||||| ||||| || | ||||| |||| Sbjct 43967 AGATGACAATTGGGGCTGAGGGGTACCAGCGTTGAAGAGTGTGGGAGAGGCATGTGTAAA 44026 Query 156341 ATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTA-GACCCGTGAA 156399 | || | ||||| | ||||||||| | ||| | || | |||| | | Sbjct 44027 GAATTTGCTGGACATCAGGTTATATGTCTCCAAGACTCGCTCGATATCATCACCCCAG-A 44085 Query 156400 TACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTC 156459 ||| | ||| || | ||| ||| |||||||| ||||| |||||| || ||||| Sbjct 44086 TACCAACAGACACACGCATGATCATGTGCTGAGGGCGCTCGACAATCTTACCGTCAATCT 44145 Query 156460 GCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATA 156499 || ||||| | || |||| ||| || || || || || Sbjct 44146 TGAGGAGGTAGGATCGCTCCAAAGTCTTGAAGCCAAAGTA 44185 >seq2855 Length=139020 Score = 145 bits (160), Expect = 2e-29 Identities = 246/354 (69%), Gaps = 2/354 (1%) Strand=Plus/Minus Query 133305 CCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACAT 133364 |||| || ||| || || || | ||||| |||||| || ||||| ||| || | Sbjct 126169 CCGAGGCTCGTTGTTTCTACGGCTTCCAGATCATGATGGAGAACATCCACTCTGAGACCT 126110 Query 133365 ATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCACAAACTATTCAACG 133424 | || ||| ||||| || |||||||| || ||| |||| | | || ||||||| Sbjct 126109 ACTCCCTTCTCATTGACACCTACATCAAGGAGCCCGCCCAGCGAACCTACCTCTTCAACG 126050 Query 133425 CCATTAGCGAAT-TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAG 133483 ||||| | || ||||||| || |||||| | |||||||| || |||||||||| Sbjct 126049 CCATT-GAGACCATTCCTTGCATCCGAAAGAAGGCCGACTGGGCCATCCGATGGATCCAG 125991 Query 133484 GACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAttttt 133543 || ||| | ||||| ||||||||||| || |||| || ||||| || || Sbjct 125990 GATAAGGACTCCTCCTTTGCCCAGCGTCTCGTTGCCTTCGCTGCTGTTGAGGGTATCTTC 125931 Query 133544 ttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTG 133603 ||||| ||||| || |||||| || ||||| || ||||||||| | | || || ||| Sbjct 125930 TTCAGCGGTGCCTTTGCCTCTATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGCCTG 125871 Query 133604 TGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCC 133657 || || ||||| || || || | || |||| || ||||| || |||||| Sbjct 125870 ACCTTCTCCAACGAGCTCATCTCTCGTGATGAGGGTCTCCACACTGACTTTGCC 125817 >seq424 Length=96465 Score = 107 bits (118), Expect = 6e-18 Identities = 122/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466 || || ||||| | | ||| || ||||| | | ||||||| || | ||| | || || Sbjct 69627 ATGAGTCCACAGATCTCACAGACGTGGACACGGAAAGCATCCGACACCTCAAACAGACGC 69686 Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526 |||| ||| || |||||||| | ||||||||||||||| |||||||| ||||| Sbjct 69687 TCCTTCAGGAAAGCAGCGGCACCGTGAGCAATCATACAATCACGTTCCATTTCTCCGAAT 69746 Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGT 251570 || ||||||||||| ||||| | ||| ||| |||| || || || Sbjct 69747 CGGAGACCACCATCACGAGCACGACCTTCGACAGGTTGTCGGGT 69790 >seq3063 Length=134530 Score = 89.7 bits (98), Expect = 2e-12 Identities = 104/140 (74%), Gaps = 3/140 (2%) Strand=Plus/Minus Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872 |||||||| | | ||| || ||||| | || ||||| |||||||| ||||||||| Sbjct 66640 AGAATTTCCTTGAGACGTGGTACACCGAGTGTAACGTT---CTTGGACGACACACCAGCA 66584 Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932 || ||||| || || || || | ||||||| |||||||| ||| ||||| || | Sbjct 66583 AAATGGAAGGTGTTTAGTGTCATCTGAGTAGCAGGCTCACCGATAGACTGTGCAGCCAGA 66524 Query 301933 ATACCAACCATTTCTCCTGG 301952 | |||||||||||| || || Sbjct 66523 ACACCAACCATTTCACCAGG 66504 >seq3358 Length=120302 Score = 86.0 bits (94), Expect = 2e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 251848 GTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCATCAGCA 251907 ||||| ||| ||| | | | ||||| || ||||| || ||||| ||| |||| || Sbjct 20038 GTCATTCGAGAGGGGAAACCGTGGGGGTTCATGATAATATCGGGGCTCAATCCACTGTCA 19979 Query 251908 GTGAAGGGCATATCCTTTTCCTCAATAATGTTTCCAATAGTTCCCTTTTGTCCGTGACGA 251967 | |||||||| ||||| || ||||| ||| | |||| |||||||| ||||||||| Sbjct 19978 GAGAAGGGCAAATCCTCTTGCTCAACAATAATACCAACGACACCCTTTTGACCGTGACGA 19919 Query 251968 GAACTGAACTTATCACC 251984 || |||||| ||||| Sbjct 19918 GACGAGAACTTGTCACC 19902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471748090654182