Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20hostae_20[genbank_20GCA_5F002234235.1_202017-07-27] 3,686 sequences; 54,581,980 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq2855 156 7e-32 seq3012 127 3e-23 seq2258 111 2e-18 seq3191 107 3e-17 seq3113 86.0 1e-10 >seq2855 Length=139020 Score = 156 bits (172), Expect = 7e-32 Identities = 236/331 (71%), Gaps = 11/331 (3%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| || || ||| ||| | |||||| ||| |||||||||||||| || ||||| Sbjct 125835 ACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATGAGACCACGCTT 125894 Query 794400 CTTGAGCCAAAAGAT---GGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGC 794456 ||||||||| ||||| |||| || || || ||| ||||| ||||| || || || Sbjct 125895 CTTGAGCCAGAAGATAGAGGCAAAGGCACCGCT---GAAGAAGATACCCTCAACAGCAGC 125951 Query 794457 AAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGC 794516 ||| | ||||| |||| |||||| | | | ||| | | |||||| || || Sbjct 125952 GAAGGCAACGAGACGCTGGGCAAAGGAGGA---GTCCTTATCCTGGATCCATCGGATGGC 126008 Query 794517 CCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTCCT 794575 ||| || ||||| || | | | || | || || |||||| ||||||| ||| | Sbjct 126009 CCAGTCGGCCTTCTTTCGGATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAGGTTCG 126068 Query 794576 TCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGT 794635 || | | || ||||||| ||||||||| ||||| || ||||||||||| |||||||||| Sbjct 126069 -CTGGGCGGGCTCCTTGATGTAGGTGTCAATGAGAAGGGAGTAGGTCTCAGAGTGGATGT 126127 Query 794636 TTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 | || || |||||||||||| || || || Sbjct 126128 TCTCCATCATGATCTGGAAGCCGTAGAAACA 126158 Score = 118 bits (130), Expect = 2e-20 Identities = 181/257 (70%), Gaps = 1/257 (0%) Strand=Plus/Plus Query 793892 GACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAG 793951 ||| || ||||| || ||| | || ||| |||||| |||||||||||||| | || Sbjct 125514 GACACCGGCCTTCTGGTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAG 125573 Query 793952 CGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAG 794011 ||||| |||||| | ||| ||||||| | | |||| ||||||| || || Sbjct 125574 GGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTAGCCTTGTAGACCTTCTCGTTGCCAAG 125633 Query 794012 CGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCAT 794071 | |||| || || ||||||||||| ||||| ||||| ||||||| | | |||||| Sbjct 125634 AGCAACAAGGAGACGATCGGCGACGAACTCAATATACTGCTTCATGAGGTCAGAGTTCAT 125693 Query 794072 GCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTC 794131 ||||| || || ||| || | ||| ||| ||||| | ||| || |||||| || Sbjct 125694 GCCGAGAAGGGCACAGGGGAGAGCCTCAGTGAGGAACTCCTGCTCAATGGTGACGGCATC 125753 Query 794132 GATGATGATCTGCCTGG 794148 ||||||| | ||||| Sbjct 125754 AGTGATGATGT-CCTGG 125769 >seq3012 Length=424931 Score = 127 bits (140), Expect = 3e-23 Identities = 183/258 (71%), Gaps = 0/258 (0%) Strand=Plus/Plus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 ||| ||||||||||| || |||| ||| ||||| || ||||| || |||| ||||||||| Sbjct 43754 CTGATCGACATAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACGCCGTTGGA 43813 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 |||||||| || || | ||||| ||| | || || | |||| || | || Sbjct 43814 TGTACCGTTGGTACCGGCGATGTAGGAGCCAGTAGCACGGATACGGTGCACGTTCAGACC 43873 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 || || || ||| ||||||||| | || || | || || || |||||||||||||| Sbjct 43874 AATACCTCCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATGCCCTC 43933 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 || |||| ||||||| || | || ||||| || || ||| || | | || || Sbjct 43934 AATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTACC 43993 Query 2073780 GGCATTGAAGAGCGTGGG 2073797 || |||||||| ||||| Sbjct 43994 AGCGTTGAAGAGTGTGGG 44011 >seq2258 Length=5340 Score = 111 bits (122), Expect = 2e-18 Identities = 91/111 (82%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 2035651 CCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTA 2035710 |||||||||| ||||||||||| ||||| ||| | || |||||||| || || ||| | | Sbjct 2901 CCAACTACCTTGACATCAAGCCTCTCCTTGATGTCGGCTGCAAGACTGTTGCAAACATGA 2960 Query 2035711 TCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCAAGTACG 2035761 ||||||||||||| ||||| || |||||||| || || ||||| | | ||| Sbjct 2961 TCAAGGGCAAGTCTCCCGAAGAGATCCGCAAAACTTTCAACATTACGAACG 3011 >seq3191 Length=123566 Score = 107 bits (118), Expect = 3e-17 Identities = 79/92 (86%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||||||||||||||||||||| |||||||||||| |||| || || ||| | | Sbjct 9185 GTACTTGGTGACGGCCTTGGTACCCTCAGAGACGGCGTGCTTGGCAAGCTCACCGGGGAG 9126 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGG 1485562 ||| ||||| || | |||||||||||| |||| Sbjct 9125 GATGAGGCGGACAGAGGTCTGGATCTCTCGGG 9094 >seq3113 Length=162823 Score = 86.0 bits (94), Expect = 1e-10 Identities = 161/237 (68%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 2019204 GGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCCAGCAG 2019263 || ||||| || | | ||||||||||| |||||| || | || |||| || ||||| Sbjct 96467 GGACGCCATAAACTTGTTATCCTCGATGAAGCCGACAGCATGACTTCGGGTGCTCAGCAA 96408 Query 2019264 GCCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGCCTGCAAC 2019323 ||||| || || ||||| | ||| | ||||| || || || || | ||||||||| Sbjct 96407 GCCCTTAGACGAACTATGGAGATATACTCTAACACTACACGATTCGCTTTCGCCTGCAAC 96348 Query 2019324 ACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCTTTGCGCGC 2019383 ||| | | |||||||| ||||||| || ||||||||| | || | || Sbjct 96347 CAGTCTAACAAGATCATCGAACCCCTCCAATCACGATGCGCCATCCTACGATACGCCAAG 96288 Query 2019384 CTCACCGACGCCCAGATCGCCGCGCGTCTGCGCGAGATTATCGACGCCGAAAAGGTC 2019440 | || |||||||| ||| ||| || | ||||| || || ||||||||| Sbjct 96287 TTAACGGACGCCCAAGTCGTAAAGCGACTCATGCAAATTATTGAGGCGGAAAAGGTC 96231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915854303368154