Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20hostae_20[genbank_20GCA_5F002234235.1_202017-07-27] 3,686 sequences; 54,581,980 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq3012 253 3e-62 seq2855 134 2e-26 seq3040 87.8 2e-12 >seq3012 Length=424931 Score = 253 bits (280), Expect = 3e-62 Identities = 1151/1789 (64%), Gaps = 53/1789 (3%) Strand=Plus/Plus Query 110324 TCAAGACTGAACTGAATTGGTCGGGCTTTCGCCTTTGATCGGAGATAGTACATCCCGGTC 110383 |||| | |||||||||| || || |||| || || || |||||||| |||||| Sbjct 42357 TCAACAGTGAACTGAATAGGAGCAGCAGCAGCCTGTGTGCGAAGGTAGTACATGCCGGTC 42416 Query 110384 TTGAGTCCTTGTTTCCATGCGTACATA-TGCATAGAAGAGAGCTTGGACATCGTTGGACT 110442 ||||| || | ||||| || | || | |||||| | || |||| |||||| || Sbjct 42417 TTGAGACCAAGCTTCCA-GCCTGCAAAGTGCATACTGGTGATCTTGCCCATCGTGGGGTC 42475 Query 110443 TTCCATGAAGAGGTTCAT--ACTTTGACTTTGGTCAATGAAGCGCCCCCGTTGTGCCGCC 110500 | |||| || ||||| ||| |||| | ||||||||| || || | || ||| Sbjct 42476 CTTCATGTGGATGTTCAGTGACTGGGACT--GATCAATGAAGGCACCTCGGTCAGCGGCC 42533 Query 110501 ATATCAATGACATCCTTCATCTTAATTTCCCAAACTGTGCGATAGAGATTCTTGATATCA 110560 || | || ||| | | ||| |||||||| || ||| ||| ||||| ||| Sbjct 42534 ATCTGAACGACCTGGCGCTGAGAAATCTCCCAAACAGTCTTATACAGAGCCTTGACATCG 42593 Query 110561 TCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTTCACCATGAGATCCTTCATA 110620 | ||||| | | || ||||| |||||||| | | | ||| | | ||||||| Sbjct 42594 GCAGGGATGTTGGGAATGTTCTGAATGGAACCATTCTCAGCAATGATGCGGTTCTTCATA 42653 Query 110621 TCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGACAATGACA 110680 | | |||||| ||||| || | ||||| |||| || |||||||| Sbjct 42654 GCATCGGACCACAGACCCATGTCGACAAGGTCCTTGAGCAGCCAGGGGTTGACAACCTGG 42713 Query 110681 AACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCA 110740 |||||||| |||||| | || | |||||||||| | ||||| || || ||||| || Sbjct 42714 AACTCACCAGCGAGGACACGTCGCTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCG 42773 Query 110741 TTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTA 110800 || || |||| || || | ||| ||| || ||||| || || | | ||||||||| Sbjct 42774 TTGTTGCCCAGAATCTGAGAGGTACTGGCAGTAGGCATAGGAGCAAGGAGCAGACTGTTA 42833 Query 110801 CGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACA---TCCCAGTCGTAGTTG--AGCT 110855 || | ||| | ||||| ||||| ||| | |||||||| || | || Sbjct 42834 CGGATACCGTGTGTCTTGAC---TTCCTCTCGAAGAGTCTCCCAGTCCCAGAGGTCAGAG 42890 Query 110856 TGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAA 110915 || || || |||| ||||||| ||||| || | || | || |||||||| |||| | Sbjct 42891 -GGCTTGACGTTCC-ACATGTCGAACTGGAGGATACCCTCAGAGGCGGGAGAGCCCTTGA 42948 Query 110916 AGGTTTCATAGGAACCTTGGGCTTCAGCCAATT-CACAGCTCGCCTCCAGGGATGCGTGA 110974 |||| |||| ||| | | | |||| | ||| | || |||| ||||| Sbjct 42949 AGGTGGAGTAGGGACCCTCCTCCTTGGCCAGCTGCACGGAG-GCAGTGAGGGCAGCGTGG 43007 Query 110975 TACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAG 111034 || ||||| || ||||| | || | ||| || || ||| || || | | Sbjct 43008 TAGATGGTCTCGAAGATCTGCTTGTTGAGCTCACGAGCCTCGGGTGACTCGAAGGGCATG 43067 Query 111035 CGGCACAA-AATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCG 111093 || || | || || |||| || || || |||||||| | |||||| |||| ||| || Sbjct 43068 CG-CAGAGCAAGGAAAGCATCAGCAAGGCCCTGAACACCGAGACCAATGGGTCGGTGGCG 43126 Query 111094 CATATTAGACTTTCGCGCAGTCTCA---ACGGGATAAAAATTTCTGTCAATGACTCGGTT 111150 ||| || || | ||| || ||| || || || || ||| |||| ||| Sbjct 43127 CATGTTG--CTGTTGCG-AGCCTCCGGGACAGGGTAGTGGTTCACGTCGATGATCTTGTT 43183 Query 111151 TAGATTTTTGGTAACAATCTTTGTGATTTCATG-AAGTTTTTCATAATCAAAAGTGCGAG 111209 || || |||||| || ||| || || || || || | | || | || | Sbjct 43184 CAGGTTGCGAATAACAACCTGACTGACCTCGTGCAACTTCTTGA-AGTCGTA---GCAGG 43239 Query 111210 TCTCTTCAT---TGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCT 111266 ||| || | ||| | || || || | || || | ||||| ||||| || Sbjct 43240 CCTCATCGTAGTTGATGAAGGAAGGCAGAGCCAGAGAGGCAAGGTTGCAGACAGCGACCT 43299 Query 111267 CATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCA 111326 | || | ||||| | |||||| || || | ||| || || || || || | Sbjct 43300 CGTCAGGGGCACAATACTCGATAATTTCAGTGCACAGGTTAGAGCTTCGGATGGTGCCGA 43359 Query 111327 AATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCG 111386 ||||||||||| ||||| |||||| |||||||||||||||||| | || | || | Sbjct 43360 GGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAAAGGGTTTCCAG 43419 Query 111387 TCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA-CATCGGCGGC-TGGTACAATGGCGTT 111444 |||| ||||| | | ||||| || | ||||| | || | | | || || | || Sbjct 43420 TCTCAGTCTGAGCCTCAAGAATGGCATACCAAAGCTTCTGAGCCTTGATAGTCTTGC--- 43476 Query 111445 GGCCCGT-CCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGT 111503 | ||| | |||||| ||| |||||| ||| || || || ||||||||||| || Sbjct 43477 GACCCTTGCCCTCCTTCTCATACTTTTCGTACAGAGCCTCGAACTCCTCACCGTAGCAGT 43536 Query 111504 CGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCC 111563 ||| ||| || || || || || || | || | ||| | ||| | ||||| | Sbjct 43537 CGGCGAGGCCAGGGCACTCGTTGGGGCACATCAGTGTCCAGTCACCGTTCTTTTCAACAC 43596 Query 111564 GCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTC-TACACCGAGCCTCT 111622 ||||||| ||||| || || ||||| |||| || || || | ||| || |||| Sbjct 43597 GCTTCATAAAAAGATCAGGGATCCAAAGGGCGAGGAACAGGTCACGGGCACGGA-CCTCC 43655 Query 111623 TCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCA 111682 || | ||| ||||| ||| | ||||||||||| | || ||| | |||||| ||||| Sbjct 43656 TCTTTACCGTGGTTCTTTCGGAGATCAAGGAACTCGAAGACATCAGAGTGCCAAGGCTCG 43715 Query 111683 AGATAGACTGCGATAGATCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTG 111739 || |||| || | || || ||| ||| | |||| |||||||| || ||| Sbjct 43716 AGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCACCCTGATCGACATAGCGAGCAGTG 43775 Query 111740 GCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGT-CCCCCGA-A 111797 ||| || || |||||||| |||| || || | ||| ||| || || || ||| Sbjct 43776 TTGTTGAAGACACGAAGCATAGGAACAACGCCGTTGGATGTACCGTTGGTACCGGCGATG 43835 Query 111798 TACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTG 111857 || ||| | | || | | | || | || || |||||||| |||||| ||| | Sbjct 43836 TAGGAG--CCAGTAGCACGGATACGGTGCACGTTCAGACCAATACCTCCAGCCATCTTGG 43893 Query 111858 AGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGG 111917 |||| ||||| | | ||||| | ||||| || | || ||| ||||| | Sbjct 43894 AGATCATGGCACAGGTCTTGAGAGTATCGTAGATGCCCTCAATACTGTCGTCCTTCATAT 43953 Query 111918 CGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTG 111977 | | | ||||||| |||| || || || |||||||| |||||||| || || | Sbjct 43954 CAACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTACCAGCGTTGAAGAGTGTGGGAG 44013 Query 111978 TTGCGTGAATGAACATACCTTG--GGACATCTTGTCGTATGTCTCCAAGACAGAATCAAT 112035 || || || | | | ||| ||||||| || |||||||||||||| || || Sbjct 44014 AGGCATG--TGTAAAGAATTTGCTGGACATCAGGTTATATGTCTCCAAGACTCGCTCGAT 44071 Query 112036 GTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGGG 112084 || || || ||| || | | || ||||||| ||||| ||| ||| Sbjct 44072 ATCATCACCCCAGATACCAACAGACACACGCATGATCATGTGCTGAGGG 44120 >seq2855 Length=139020 Score = 134 bits (148), Expect = 2e-26 Identities = 336/504 (67%), Gaps = 20/504 (4%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 ||||| | || |||||||| |||||||||||||| ||| ||||| ||||| ||||| Sbjct 125530 TAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCATG 125589 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAA-----TGGGTGGCACCC-CAACTTGTTTGAGG 122484 ||||| || || || | || || | | | | || || |||| ||| Sbjct 125590 AAGTCGAAGGGGTTGGTAGCCTTGTAGACCTTCTCGTTGCCAAGAGCAACA------AGG 125643 Query 122485 AGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGG 122544 |||||||| | || ||||||| |||| ||| ||||||||||| |||| ||| Sbjct 125644 AGACGATCGGCGACGAACTCAATATACTGCTTCATGAGGTCAGAGTTCATGCCGAGAAGG 125703 Query 122545 TTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATG 122604 ||| ||||| || || || |||| | | |||||| || || || | | |||| Sbjct 125704 GCACAGGGGAGAGCCTCAGTGAGGAACTCCTGCTCAATGGTGACGGCATCAGTGATGATG 125763 Query 122605 GCGTGGATAGTTTCGGTAGTGGGTCTA---TTACGCAAAGTCTTGAAGAGCTCCACGGCA 122661 | ||||| | | | ||| | | || | || | || ||| || |||| Sbjct 125764 TCCTGGATCATCTGCTTGCTGGCACGACCCTTGAGGTGAGAGTGGAGGAGG--CA-GGCA 125820 Query 122662 AACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGC 122721 || || ||||||||||||||| || || || || || || |||||| || || ||| Sbjct 125821 AAGTCAGTGTGGAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGGCCGGGC 125880 Query 122722 ATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCC 122781 |||||||| |||||||| | ||| | |||| | || | ||| ||||||||||||| Sbjct 125881 ATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCAAAGGCACCGCTGAAGAAGATACCC 125940 Query 122782 TCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAG-ACTTTGCATCAAACCA 122840 || ||| || || |||| || || | ||| |||||| ||| ||| | | | ||| Sbjct 125941 TCAACAGCAGCGAAGGCAACGAGACGCTGGGCAAAGGAG-GAGTCCTTATCCTGGATCCA 125999 Query 122841 TTTCATTGCCCATTTCGCCTTCTT 122864 | || ||||| | |||||||| Sbjct 126000 TCGGATGGCCCAGTCGGCCTTCTT 126023 >seq3040 Length=190208 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 164605 ATGGTCGTGTTGCACCACGATCCGGTCTCGCTGTGAAGCATGGTATTCAAGTTGGTGCGG 164664 |||| || |||| || ||||||||||||||| |||||| ||| | || || | Sbjct 120269 ATGGACGCATTGCCCCTCGATCCGGTCTCGCTTCCAAGCATTTCATTGACACAGGCGCTG 120210 Query 164665 GTGTTATTGATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAATCACGGAGACA 164724 |||| || ||| |||| || ||| | ||||| ||| | || ||||| || || Sbjct 120209 GTGTCATCGATGCCGATTACCGCGGTCAGGTCAAGGTCCTGCTTTTCAACCATAACGAAT 120150 Query 164725 AAGACTTTGAGGTAAAGAAAGGGGATCGCATCGCACAACTTGTCCTTGAGCGC 164777 ||||||||||| ||| | || || ||||| || |||||||| || |||||| Sbjct 120149 CCGACTTTGAGGTGAAGGAGGGCGACCGCATTGCTCAACTTGTTCTGGAGCGC 120097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628003063425600