Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20hostae_20[genbank_20GCA_5F002234235.1_202017-07-27] 3,686 sequences; 54,581,980 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq413 167 7e-36 seq2145 154 4e-32 seq3544 102 2e-16 seq3063 98.7 3e-15 >seq413 Length=406985 Score = 167 bits (184), Expect = 7e-36 Identities = 447/676 (66%), Gaps = 17/676 (3%) Strand=Plus/Minus Query 349262 GAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAA 349321 || || || || || || || |||||| |||| || || |||| ||| | || ||||| Sbjct 399460 GATATCATCGCCAACGACCAGGGTAACCGAACTACCCCCTCATTCGTCGGTTTCACCGAC 399401 Query 349322 ACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACG 349381 || |||||| ||||||||||| | || || || |||| ||| || || | || || Sbjct 399400 ACCGAGCGTCTGATTGGTGATGCCGCCAAGAACCAAGTCGCTATGAACCCCCAGAACACT 399341 Query 349382 GTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTT-----TTCTGACAAATCTACACAA 349435 || || || || |||||| | || ||| | ||||| | |||| || || Sbjct 399340 GTCTTCGACGCCAAGCGATTGATCGGTCGCAAGTTCGCCGATCCTGAGG--TC----CAG 399287 Query 349436 TCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATT 349495 | || | || || || || || | | || | | ||| |||| ||| || |||| Sbjct 399286 GCCGACATGAAGCACTTCCCCTTCAAGATCGT-CGACAAG--GGTGGTAAGCCCGTTATC 399230 Query 349496 GAGGTTGAATATAAAGGTGA-ACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGT 349554 |||||||| | || || || || || || || ||||| || || || | ||| | Sbjct 399229 GAGGTTGAGTTCAAGGGCGAGACCAAGACC-TTCACCCCCGAGGAGATCTCCGCCATGAT 399171 Query 349555 TTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGT 349614 | || ||| || | ||||| | || | || || || || | | ||||| Sbjct 399170 CCTCACCAAGATGCGTGAGACCGCTGAGTCTTACCTTGGCGAGACTGTCAACAACGCTGT 399111 Query 349615 TATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAG 349674 | |||| || || ||||| || || ||| | |||||| || || || |||||||| Sbjct 399110 TGTTACCGTCCCCGCCTACTTCAACGATTCTCAGCGTCAAGCCACCAAGGATGCTGGTCT 399051 Query 349675 CATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATA 349734 ||| || || | || ||||| |||| ||||| || || |||||||| || ||||| || Sbjct 399050 CATCGCCGGTCTCAACGTTCTCCGAATCATTAACGAGCCTACTGCTGCCGCCATTGCCTA 398991 Query 349735 TGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGG 349794 || || || || | | ||| || || | || || || ||| | |||||||| Sbjct 398990 CGGTCTCGACAAGAAGGTTGAGGGTGAGCGCAACGTCCTCATCTTCGATCTTGGTGGTGG 398931 Query 349795 TACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGC 349854 ||| || ||||| || || || || |||| ||||| || || || || || | ||||| Sbjct 398930 TACCTTCGATGTGTCTCTCCTTACCATTGAGGAGGGTATCTTCGAGGTCAAGTCTACTGC 398871 Query 349855 TGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAA 349914 ||||| || || | ||||| || || || || || ||||| || || || ||||| Sbjct 398870 CGGTGACACCCACTTGGGTGGTGAGGACTTCGACAACCGTCTGGTCAACCACTTCGTTAA 398811 Query 349915 AGAATTTAAGCGTCAA 349930 || || |||||| || Sbjct 398810 TGAGTTCAAGCGTAAA 398795 >seq2145 Length=460897 Score = 154 bits (170), Expect = 4e-32 Identities = 175/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | |||||||| |||||||||||||| || ||||| || | Sbjct 353812 TTTGCATACCACCACGGAGGCGGAGAACAAGGTGAAGAGTAGACTCCTTCTGAATGTTGT 353753 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 ||||||| | || || || || ||||| || || ||||||||||| | |||||||| | Sbjct 353752 AATCAGAGAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATCAAGCGTTGCTGGT 353693 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || ||||| || || || |||||||| || | || || || || || | || || | Sbjct 353692 CGGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATAGTGTCGGAAG 353633 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || || || | ||||| ||||| | || || || || |||||||| Sbjct 353632 ACTCAACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 353578 Score = 150 bits (166), Expect = 5e-31 Identities = 174/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | ||||| | || || ||||| || || || || || || || Sbjct 354318 CATACCACCACGAAGACGGAGAACCAAGTGGAGGGTAGATTCCTTCTGGATGTTGTAGTC 354259 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | ||||| || || |||||||| || ||||||||||| || || || ||||| || Sbjct 354258 GGAAAGAGTTCGGCCGTCCTCAAGTTGCTTGCCAGCAAAGATGAGTCGCTGTTGATCGGG 354199 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTT-ACATTATCAATCGAATCAGATGGTT 140685 |||||| || || || || ||||| || ||| || ||||||||||| | ||| |||| | Sbjct 354198 AGGAATACCCTCCTTGTCTTGAATCTT-GCTCTTCACATTATCAATGGTATCGGATGACT 354140 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | ||||| || |||| |||||||| || || || || || || || ||||| Sbjct 354139 CGACTTCCAGAGTAATGGTCTTTCCAGTGAGGGTCTTGACGAAGATTTGCAT 354088 Score = 136 bits (150), Expect = 1e-26 Identities = 164/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || || |||||||| ||||| || || ||||| || | Sbjct 354094 TTTGCATACCACCACGGAGGCGGAGGACGAGATGAAGGGTAGATTCCTTCTGAATGTTGT 354035 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || | | ||||| || || |||||||| || ||||||||||| || || ||||||| Sbjct 354034 AGTCGGCGAGGGTTCGGCCGTCCTCAAGTTGCTTGCCAGCAAAGATCAGGCGCTGCTGAT 353975 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 ||||||| || || || || ||||| || || | || ||||| || || | || |||| Sbjct 353974 CAGGAGGGATGCCCTCCTTGTCCTGGATCTTTGACTTGACATTGTCGATAGTGTCGGATG 353915 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 ||||| || || || | ||||| || || || || || || Sbjct 353914 ACTCAACCTCGAGAGTGATAGTCTTGCCAGTGAGGGTCTTGAC 353872 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 ||||| || || ||||| ||||| || || || || || || | || || |||||| Sbjct 354527 AGAACGAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGACCATCT 354468 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||| ||||| ||||||||||||||||| || || || || || ||| Sbjct 354467 TCCAGCTGCTTACCAGCGAAGATAAGACGTTGCTGATCAGGGGGGATACCCTCCTTGTCC 354408 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 ||||| ||| || || || ||||| | ||| | || || ||||| || | || Sbjct 354407 TGAATCTTACTCTTCACGTTGTCAATAGTGTCACTGGACTCGACCTCAAGGGTGATGGTT 354348 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 |||||||| || || || || ||||||||||| Sbjct 354347 TTTCCGGTGAGAGTCTTAACGAAAATCTGCAT 354316 >seq3544 Length=114148 Score = 102 bits (112), Expect = 2e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || || || || || ||||| || || || || || || Sbjct 38597 CATACCACCACGGAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 38538 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | || || ||||| || || || || ||||||||||| || || ||||| || || Sbjct 38537 GCTCAGGGTGCGTCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGG 38478 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || ||||| || || | || || || || || | || || | || Sbjct 38477 GGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTC 38418 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || | ||||| || || || || || || ||||||||||| Sbjct 38417 CACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 38367 >seq3063 Length=134530 Score = 98.7 bits (108), Expect = 3e-15 Identities = 102/133 (77%), Gaps = 3/133 (2%) Strand=Plus/Minus Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517 ||||| ||||| ||||||| ||| || || | ||||||||||| ||||| || || Sbjct 66625 CGTGGTACACCGAGTGTAACGTTC---TTGGACGACACACCAGCAAAATGGAAGGTGTTT 66569 Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577 || || | ||||||| |||||||| || ||||| || || | ||| ||||||||||| Sbjct 66568 AGTGTCATCTGAGTAGCAGGCTCACCGATAGACTGTGCAGCCAGAACACCAACCATTTCA 66509 Query 377578 CCAGGATTGACAA 377590 ||||| || |||| Sbjct 66508 CCAGGGTTCACAA 66496 Score = 84.2 bits (92), Expect = 7e-11 Identities = 185/276 (67%), Gaps = 6/276 (2%) Strand=Plus/Minus Query 378201 ATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAACCAGTTTGACTAGTTTTAACTGC 378260 |||||| | || || | | |||||| || ||||| |||| ||| || ||||| Sbjct 65864 ATCTTCCAGAGCCTTGACCAATCGTCGCTGGATGTAACCTGTTTCGGCAGTCTTGACTGC 65805 Query 378261 AGTATCAATTAAACCAACACGACCACCCATTGCATGGAAGAATAATTCAGTAGGAGTAAG 378320 ||||||||| | ||| | |||||| |||| || || ||||| || || | || ||||| Sbjct 65804 AGTATCAATGAGACCTTCTCGACCAGCCATGGCGTGAAAGAAAAACTCGCTGGGGGTAAG 65745 Query 378321 TCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCCTGGCGAATCATCATATTTTGT 378380 |||| | | || |||| | || || | || | || || | ||| | || || Sbjct 65744 ACCACGGAGGTAGGAGTTCTCGACGAAGCCACGGGCCTCGGGTGAGTAATCGTCCTTGGT 65685 Query 378381 ATAATGAGGTAATGTACGATTCTCAAACCCATATGGAATTCGTTTTCCATCAACATTCTG 378440 ||||||||| ||| || | || || || | ||||| || || || ||||| | || Sbjct 65684 GAAATGAGGTAGTGTGCGGTACTTGAAACCGAAAGGAATACGCTTGCCTTCAACGATTTG 65625 Query 378441 TTGAC---CAAGTGCAGAAACCATTTGAGCAATATT 378473 |||| |||| |||| ||| |||| |||||| Sbjct 65624 CTGACCGACAAGCGCAG---TCATCTGAGAAATATT 65592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515182839269858