Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20hostae_20[genbank_20GCA_5F002234235.1_202017-07-27] 3,686 sequences; 54,581,980 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq3012 242 4e-59 >seq3012 Length=424931 Score = 242 bits (268), Expect = 4e-59 Identities = 528/784 (67%), Gaps = 26/784 (3%) Strand=Plus/Minus Query 53180 CCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTC 53239 |||||| | | ||||||| || | | |||||| ||||| || | ||| ||| Sbjct 44119 CCTCAGCACATGATCATGCGTGTGTCTGTTGGTATCTGGGGTGATGATATCGAGCGAGTC 44060 Query 53240 CGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTC 53299 ||||| || || | ||| | || | |||||| || ||| | || || || ||| Sbjct 44059 TTGGAGACATATAACCTGATGTCCAGCAAATTCTTTACACATGCCTCTCCCACACTCTTC 44000 Query 53300 AACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGAC 53359 ||||||||||| ||| || || |||| |||||| |||| | |||||||| ||| Sbjct 43999 AACGCTGGTACCCCTCAGCCCCAATTGTCATCTTGCTTCTTGGTTGATATGAAGGACGAC 43940 Query 53360 TCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGT 53419 || || ||||||||||| || |||||| |||||| ||||||||| | | || Sbjct 43939 AGTATTGAGGGCATCTACGATACTCTCAAGACCTGTGCCATGATCTCCAAGATGGCTGGA 43880 Query 53420 GGTATCGGTATCCAC-TGCTC-GAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGA 53477 ||||| ||| | || ||| | | | ||||||| | ||| | ||| || || | Sbjct 43879 GGTATTGGTCTGAACGTGCACCGTA--TCCGTGCTACTGGCTCCTACATCGCCGGTACCA 43822 Query 53478 ACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACG 53537 |||| || | || | || |||||||| || |||||||||||||| || || || | Sbjct 43821 ACGGTACATCCAACGGCGTTGTTCCTATGCTTCGTGTCTTCAACAACACTGCTCGCTATG 43762 Query 53538 TCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACG 53597 || | |||||||| ||||| || | || ||||||||||||||||| |||||| Sbjct 43761 TCGATCAGGGTGGCAACAAGCGACCCGGTGCTTTTGCCATCTACCTCGAGCCTTGGCACT 43702 Query 53598 CCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCC 53657 | || | | ||||| || || || || ||| || ||| | || ||| | || || Sbjct 43701 CTGATGTCTTCGAGTTCCTTGATCTCCGAAAGAACCACGGTAAAGAGGAGGTCCGTGCCC 43642 Query 53658 GTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACG 53717 |||||||||| || || ||||| || || || || ||| | || || ||| ||| Sbjct 43641 GTGACCTGTTCCTCGCCCTTTGGATCCCTGATCTTTTTATGAAGCGTGTTGAAAAGAACG 43582 Query 53718 AGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTC-CAGGGTGTCTACGGTGAG 53776 || ||| ||||||||||| ||||||||||| |||||| | | || |||||||||| Sbjct 43581 GTGACTGGACACTGATGTGCCCCAACGAGTGCCCTGGCCTCGCCGACTG-CTACGGTGAG 43523 Query 53777 GAGT---------TTAACGAGATGTATCGGACGTA-CGCAGTTCAGGGCCGCTACAAGAA 53826 |||| | |||| | |||| || | | ||| |||| ||| || Sbjct 43522 GAGTTCGAGGCTCTGTACGAAAAGTATGAGAAGGAGGGCA----AGGGTCGC------AA 43473 Query 53827 GAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAAC 53886 || ||||||| | || | ||| |||| || || || ||| ||||| |||| Sbjct 43472 GACTATCAAGGCTCAGAAGCTTTGGTATGCCATTCTTGAGGCTCAGACTGAGACTGGAAA 43413 Query 53887 GCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGT 53946 || | |||| |||||||||| | |||| ||||||||||| |||||| ||||| Sbjct 43412 CCCTTTCATGCTCTACAAGGATGCCTGCAACCGCAAGAGCAACCAAAAGAACCTCGGCAC 43353 Query 53947 CATC 53950 |||| Sbjct 43352 CATC 43349 Score = 102 bits (112), Expect = 9e-17 Identities = 552/861 (64%), Gaps = 56/861 (7%) Strand=Plus/Minus Query 55097 GACTTTGACAAGCTTCACGAAGTGACGCGTGTTGTGACTCGGAACCTGAACCGGGTCATC 55156 ||||| | ||| | ||||| || | | ||||| | ||| ||||||||| | ||||| Sbjct 43231 GACTTCAAGAAGTTGCACGAGGTCAGTCAGGTTGTTATTCGCAACCTGAACAAGATCATC 43172 Query 55157 GACAAGAATTACTACCCGACTGAAGCGGCGCGCAAGTCCAACCTCCGGCACCGGCCCATC 55216 ||| ||| ||||||| | ||| ||||| |||| | || ||||| ||||| Sbjct 43171 GACGTGAACCACTACCCTGTCCCGGAGGCTCGCAACAGCAACATGCGCCACCGACCCATT 43112 Query 55217 GCCATCGGTGTACAGGGCTTGGCCGACATCTTCATGATGCTCGGAT--TGCCCTTCGACT 55274 | ||||||| |||||| | || || ||| | ||||| | |||||||||| | Sbjct 43111 GGTCTCGGTGTTCAGGGCCTTGCTGATGCTTTCCT--TGCTCTGCGCATGCCCTTCGAGT 43054 Query 55275 CGGAACCT--GCTCGAGAAATTAACCAGGACATCTTC-AGTCGCATCTACTTTGCAGCGC 55331 | | || ||||| || | ||| || | |||||| || | ||||||| || || | Sbjct 43053 C--ACCCGAGGCTCGTGAGCTCAACAAGCAGATCTTCGAGAC-CATCTACCACGCTGCCC 42997 Query 55332 TCGAGGAGTC-GTGTCATCTGGCTATGAGCGAGGGGACCTACGAGACGTTCCGTGATTCG 55390 || | || ||| || ||||| | | ||||| ||||| || ||| | || Sbjct 42996 TCACTGCCTCCGTG-CAGCTGGCCAAGGAGGAGGGTCCCTACTCCACCTTCAAGGGCTCT 42938 Query 55391 CCAGCTGACAAGGGACTTCTCCAGTTCGATCTATGG---GGCAAG---TCTGACCCCATG 55444 || || |||| | ||||||||||| | ||| | |||| ||||||| | | Sbjct 42937 CCCGCCTCTGAGGGTATCCTCCAGTTCGACATGTGGAACGTCAAGCCCTCTGACCTCTGG 42878 Query 55445 ---TTTGACA-------AGTTGAAG-CATGACATTCACTTGTGGGGCCTACGCAACTCCC 55493 | || | || |||| || |||| ||| || | || ||| | Sbjct 42877 GACTGGGAGACTCTTCGAGAGGAAGTCAAGACA--CAC------GGTATCCGTAACAGTC 42826 Query 55494 TGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGCGT 55553 ||||| | || || ||||| || || || ||||||| |||||||||||||| | Sbjct 42825 TGCTCCTTGCTCCTATGCCTACTGCCAGTACCTCTCAGATTCTGGGCAACAACGAGTGCT 42766 Query 55554 TCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCATGA 55613 ||||||| ||||| |||||||||||| ||| || ||| || |||||||| | Sbjct 42765 TCGAGCCCTACACCTCCAACATCTACCAGCGACGTGTCCTCGCTGGTGAGTTCCAGGTTG 42706 Query 55614 TCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCGCAG--ATCAA 55671 ||||| || |||||||||| | || |||| ||| | || || Sbjct 42705 TCAACCCCTGGCTGCTCAAGGACCTTGTCGACATGGGTCTGTGGT--CCGATGCTATGAA 42648 Query 55672 GA--CGGAT-ATTGTGCGGAACGGGGGGTCCGTCCAGAA---TCTGGAGATTCCTCTGCG 55725 || || || |||| ||| || ||| | ||||| || | || ||| Sbjct 42647 GAACCGCATCATTGCTGAGAATGGT---TCCATTCAGAACATTCCCAACATCCCTGCCGA 42591 Query 55726 TCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGA---AGAGTCTGATTGACAT 55782 | |||||| | || ||| || ||||||||| | ||| || ||| || | || Sbjct 42590 TGTCAAGGCTCTGTATAAGACTGTTTGGGAGATTTCTCAGCGCCAG-GTCG--TTCAGAT 42534 Query 55783 GAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAA 55842 | ||||| || ||||| | ||| || ||||||||||| ||||||||| |||| || | Sbjct 42533 GGCCGCTGACCGAGGTGCCTTCATTGATCAGTCCCAGTCACTGAACATCCACATGAAGGA 42474 Query 55843 TCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGAC 55902 || | ||| |||| | | | ||||||||| || |||||| || |||||||| Sbjct 42473 CCCCACGATGGGCAAGATCACCAGTATGCACTTTGCAGGCTGGAAGCTTGGTCTCAAGAC 42414 Query 55903 GGGTATGTACTATCTGCGGAC 55923 || |||||||| || || || Sbjct 42413 CGGCATGTACTACCTTCGCAC 42393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547190787022800