Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20hostae_20[genbank_20GCA_5F002234235.1_202017-07-27] 3,686 sequences; 54,581,980 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq3544 156 1e-32 seq2145 154 4e-32 seq274 145 2e-29 >seq3544 Length=114148 Score = 156 bits (172), Expect = 1e-32 Identities = 158/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || ||||| || || ||||||||||| |||||||| || ||| Sbjct 38370 CAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCCGAC 38429 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| |||||||| || || ||||| || |||||||| Sbjct 38430 ACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAG 38489 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| ||||| || || || |||||||| |||||| | || || ||| || ||| || Sbjct 38490 CGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGACGCACCCTGAGCGACTACAACATC 38549 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 38550 CAGAAGGAGTCCACCCTCCACCTGGT 38575 >seq2145 Length=460897 Score = 154 bits (170), Expect = 4e-32 Identities = 163/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || |||||||| |||||||| |||||||| ||||| || | ||| Sbjct 354319 CAGATTTTCGTTAAGACTCTCACCGGAAAAACCATCACCCTTGAGGTCGAGTCCAGTGAC 354378 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||| || |||||||||||||| || || ||||| || || |||||| Sbjct 354379 ACTATTGACAACGTGAAGAGTAAGATTCAGGACAAGGAGGGTATCCCCCCTGATCAGCAA 354438 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||||||||| || || ||||| |||||||| | || || ||| || ||| || Sbjct 354439 CGTCTTATCTTCGCTGGTAAGCAGCTGGAAGATGGTCGCACCCTGAGCGACTACAACATC 354498 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 || || || ||||| || || || ||| | |||| Sbjct 354499 CAGAAGGAGTCAACTCTCCACCTCGTTCTCCGACT 354533 Score = 122 bits (134), Expect = 2e-22 Identities = 151/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || | || || || || |||||||||||||| || || ||| Sbjct 353581 CAGATCTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTTGAGTCTTCCGAC 353640 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| |||||||||||||| || || || || || ||||||||| Sbjct 353641 ACTATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCCGACCAGCAA 353700 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || || ||||| || || || | || || | ||||| ||| | Sbjct 353701 CGCTTGATCTTTGCTGGCAAGCAGCTTGAGGACGGCCGCACCCTCTCTGATTACAACATT 353760 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || || || || || || |||||| Sbjct 353761 CAGAAGGAGTCTACTCTTCACCTTGTT 353787 >seq274 Length=55280 Score = 145 bits (160), Expect = 2e-29 Identities = 140/180 (78%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988 ||||||||| || || || || || || |||||||||||||| || ||| |||||||| Sbjct 12176 TTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCAT 12235 Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048 ||| || ||||| ||||| |||||||| || || || || |||||||| || ||||| Sbjct 12236 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGACT 12295 Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 |||||||| || || |||||||| ||||| | ||||| |||| || ||| |||| || Sbjct 12296 GATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGAACTCTCTCCGACTACAACATCCAGAA 12355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203674351537084