Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20langsethiae_20[genbank_20GCA_5F001292635.1_202015-09-16]
1,586 sequences; 37,543,021 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq700 114 1e-20
>seq700
Length=246488
Score = 114 bits (126), Expect = 1e-20
Identities = 354/544 (65%), Gaps = 19/544 (3%)
Strand=Plus/Minus
Query 16985 CCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTC 17044
|||||||| | ||| || |||||||| || |||| |||||||| || || |||
Sbjct 27969 CCCTCGTCACGAGAGATGAGCTCGTTAGAGAAAGTCAGACCGGGCATGAGACCACGCTTC 27910
Query 17045 TTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAAC 17104
|| | ||| || || | || || | || ||||| |||||||| || | |||||
Sbjct 27909 TTGAGCCAGAAAATGGAAGCAAAGGCACCGCTGAAGAAGATACCCTCAACAGCAGCAAAG 27850
Query 17105 GCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCG 17164
|| | | || | ||| | | | || |||| | |||||| |||| ||
Sbjct 27849 GCAACAAGACGCTGGGCAAAGGAAGAGTTCTTGTCCTGGATCCATCGAATAGCCCAATCA 27790
Query 17165 GCTTTTTGCTTT---ATGCAATCCATCGTTTCTATGGCCTTAAA----TAATTTCTCTTT 17217
|| || |||| |||||| || || || | ||| || || ||| ||||||
Sbjct 27789 GCCTT---CTTTCGGATGCAAGGAATGGTGTCAACGGCGTTGAAGAGGTAAGTTCTCTGA 27733
Query 17218 TTCCTGTAGG-TCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGT 17276
| ||| || | || || || || ||||| || ||| |||||||||| ||||
Sbjct 27732 -----GCAGGCTCCTTGATGTAGGTGTCAATGAGCAGAGAGTATGTTTCGGAGTGGATGT 27678
Query 17277 TCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGT 17336
||||||| ||||| || ||||| |||||||| || || | || ||||| || ||
Sbjct 27677 TCTCCATCATGATCTGGAAACCGTAGAAGCATCGAGCCTCAGGGATCTGAACCTCGCCGC 27618
Query 17337 AGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATA 17396
|||||| || | || || ||||| || || || ||| ||||| || || || | |
Sbjct 27617 TGAATCGCTCAACAAGGTTCTCGTTGACAATACCATCGGAGGCGGCAAAGAAAGCAAGAA 27558
Query 17397 TATGCTTAATGAAATATTTTTCGTCCGGTGTAAGA---ACGCGCCAGTCCTTTAAATCTT 17453
| || ||||| || | ||||||| || ||| | |||||| | | ||| |
Sbjct 27557 TGTGGGAGATGAAGTACTGCTCGTCCGCAGTTAGACGGTTGTTCCAGTCATGGAGATCCT 27498
Query 17454 TGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCC 17513
|||| | ||| | || |||| ||||| || |||| | ||||| || ||||| | ||
Sbjct 27497 TGGAAAGATCGATCTCCTCGGCTGTCCAGAAGGAAGCCTCGGCCTTCTTGTACATTTGCC 27438
Query 17514 AAAT 17517
| ||
Sbjct 27437 AGAT 27434
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517535339658480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |