Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20langsethiae_20[genbank_20GCA_5F001292635.1_202015-09-16]
1,586 sequences; 37,543,021 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq700 269 3e-67
seq391 143 3e-29
seq1221 138 1e-27
seq1088 138 1e-27
>seq700
Length=246488
Score = 269 bits (298), Expect = 3e-67
Identities = 555/810 (69%), Gaps = 18/810 (2%)
Strand=Plus/Plus
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| |||||||| ||||||||||| || |||||||| | ||||||| | || ||
Sbjct 27434 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACAGCCGAGGAGATCGATCTT 27493
Query 116696 TCCAAGGA-CACGAGCGACTGGGAGCGC--TTGAACGACA-ACGAGCGCCATTTCATCAA 116751
|||||||| | | | |||||| | | | ||| | |||||| | ||||||
Sbjct 27494 TCCAAGGATCTCCAT-GACTGGAACAACCGTCTAACTGCGGACGAGCAGTACTTCATCTC 27552
Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811
||| | || || || || |||||| ||| || || ||||||||||| || || |||||
Sbjct 27553 CCACATTCTTGCTTTCTTTGCCGCCTCCGATGGTATTGTCAACGAGAACCTTGTTGAGCG 27612
Query 116812 TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871
||| ||||| ||| | | ||||| || ||||||||||| || |||||| ||
Sbjct 27613 ATTCAGCGGCGAGGTTCAGATCCCTGAGGCTCGATGCTTCTACGGTTTCCAGATCATGAT 27672
Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT----GCGCTCTT 116927
||||||| | ||||| |||| || || ||||| ||||| ||| | | || ||
Sbjct 27673 GGAGAACATCCACTCCGAAACATACTCTCTGCTCATTGACACCTACATCAAGGAGC-CTG 27731
Query 116928 CGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGG 116987
| | ||||| | | | || |||||| | || || || || ||| || | ||||||
Sbjct 27732 CTCA-GAGAACTTAC--CTCTTCAACGCCGTTGACACCATTCCTTGCATCCGAAAGAAGG 27788
Query 116988 CCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGG 117047
| || ||||| | || |||||| | || | | |||| | | |||| || || |
Sbjct 27789 CTGATTGGGCTATTCGATGGATCCAGGACAAGAACTCTTCCTTTGCCCAGCGTCTTGTTG 27848
Query 117048 CCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCA 117107
|||| || || || ||||| ||||||| || || || |||| || |||||||
Sbjct 27849 CCTTTGCTGCTGTTGAGGGTATCTTCTTCAGCGGTGCCTTTGCTTCCATTTTCTGGCTCA 27908
Query 117108 AGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167
|||| || || ||||||||||| ||||||||| |||||||||||||| | |||||||
Sbjct 27909 AGAAGCGTGGTCTCATGCCCGGTCTGACTTTCTCTAACGAGCTCATCTCTCGTGACGAGG 27968
Query 117168 GTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGG 117227
|||| || |||||||||||| | || | || | | || | ||| |
Sbjct 27969 GTCTTCACACCGACTTTGCCTGCCTCCTCCACTCTCACCTCAAGGGACGTGCCAGCAAGC 28028
Query 117228 CGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAG 117287
| || ||| ||| ||||||| || || |||| |||||| |||||||| || |
Sbjct 28029 AGATGATCCAGGACATCATCACCGATGCCGTTACCATTGAGCAGAAGTTCCTCACTGAGG 28088
Query 117288 CGCTGCC-GGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGAGTT 117345
| || || |||| |||||| || | || | |||| | ||| ||| |||||||||||
Sbjct 28089 CTCTCCCTTGTGC-TCTGCTAGGCATGAACT-CGAACCTCATGAAGCAGTACATCGAGTT 28146
Query 117346 CGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCC 117405
|||||| || | ||||| ||| || | | || ||| ||||| | |||||||
Sbjct 28147 CGTCGCTGATCGTCTGCTCGTCGCCCTCGGCAACGAGAAGGTGTACAAGGCCACCAACCC 28206
Query 117406 GCTGGACTTTATGAACCTCATCTC-CTTGG 117434
| ||||| ||| | |||||| |||||
Sbjct 28207 CTTCGACTTCATGGAGAACATCTCTCTTGG 28236
>seq391
Length=65998
Score = 143 bits (158), Expect = 3e-29
Identities = 157/209 (75%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||||||||| || || ||||| ||||| ||||||||| | || ||||| | |
Sbjct 44672 ATGCAAATATTCGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTCGAGTCTTCT 44613
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|| | | | | | ||||| || |||| ||||| |||||||| || | ||||||
Sbjct 44612 GATACCATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAG 44553
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| ||| | || | ||| ||||| ||||| || || | ||||||||| ||||||||||
Sbjct 44552 CAGCGATTGATTTTCGCCGGCAAGCAGCTCGAAGATGGCCGCACCCTCTCCGACTACAAC 44493
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
|||||||||||| |||| || || || ||
Sbjct 44492 ATCCAGAAGGAGTCCACTCTTCACCTGGT 44464
Score = 125 bits (138), Expect = 7e-24
Identities = 153/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| || || || || ||||| ||||| ||||||||| | || ||||| | |
Sbjct 44900 ATGCAAATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTCGAGTCTTCT 44841
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|| | | | | | ||||| || |||| ||||| |||||||| || | ||||||
Sbjct 44840 GATACCATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAG 44781
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| ||| | || | ||| ||||| ||||| || |||| ||||||||| |||||||||
Sbjct 44780 CAGCGATTGATTTTCGCCGGCAAGCAGCTTGAGGACGGGCGCACCCTGTCTGACTACAAC 44721
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
|| |||||||| | || || ||||| ||
Sbjct 44720 ATTCAGAAGGAATCAACCCTTCATCTCGT 44692
>seq1221
Length=114529
Score = 138 bits (152), Expect = 1e-27
Identities = 139/181 (77%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758
||||| || || || |||||||| ||||||||| |||| ||||| || | |||| | |
Sbjct 56272 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATC 56331
Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818
| | ||||| || || | ||||| |||||||||||| |||||||||| ||| |
Sbjct 56332 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGATTG 56391
Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878
|||| ||| ||||| ||||| || || | || |||||| |||||||||||||||||||
Sbjct 56392 ATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGAACCCTCTCCGACTACAACATCCAGAAG 56451
Query 40879 G 40879
|
Sbjct 56452 G 56452
>seq1088
Length=144876
Score = 138 bits (152), Expect = 1e-27
Identities = 158/210 (75%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || || ||||| || || |||||| | || || || | ||
Sbjct 60485 ATGCAGATTTTCGTCAAGACCCTTACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCC 60544
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | |||| ||||| || || | ||||| |||||||| ||| |||||||
Sbjct 60545 GACACCATTGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCA 60603
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| ||||| |||| || || || ||||| || || | |||||||| | |||||||||
Sbjct 60604 GCAGCGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTACAA 60663
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
||||||||||||| |||| || || || ||
Sbjct 60664 CATCCAGAAGGAGTCCACTCTCCACCTGGT 60693
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515208985779360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |