Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20langsethiae_20[genbank_20GCA_5F001292635.1_202015-09-16]
1,586 sequences; 37,543,021 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq1088 127 2e-24
seq1221 107 2e-18
seq391 107 2e-18
>seq1088
Length=144876
Score = 127 bits (140), Expect = 2e-24
Identities = 154/210 (73%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||| ||||| || ||||| || || |||||||| ||||||| ||||| |||||||
Sbjct 60693 ACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCG 60634
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
||||| || ||||| |||| || |||||||| || || || ||||||||||||||
Sbjct 60633 AGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGG 60574
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| || || || | || | |||||| | ||| ||||| | ||| | ||| ||
Sbjct 60573 ATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTC 60514
Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739
|| || || || || || ||||||||||||
Sbjct 60513 CCCGTAAGGGTCTTGACGAAAATCTGCATG 60484
>seq1221
Length=114529
Score = 107 bits (118), Expect = 2e-18
Identities = 139/191 (73%), Gaps = 2/191 (1%)
Strand=Plus/Minus
Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610
|| || |||||||| ||| | || || |||||||||||| || |||||| ||||
Sbjct 56450 TTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATC 56391
Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670
| |||||||| || || || |||||||||||||| || || || || | |||
Sbjct 56390 AATCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 56331
Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730
| |||||||| | ||||||||||| ||| | || ||||| ||||| || || || |||
Sbjct 56330 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAA 56271
Query 118731 ATCTGCATGGC 118741
||| |||||
Sbjct 56270 --CTGGATGGC 56262
>seq391
Length=65998
Score = 107 bits (118), Expect = 2e-18
Identities = 143/199 (72%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601
|| || || || ||||||||||| || || |||||| ||||| ||||| || ||
Sbjct 44704 GTTGATTCCTTCTGAATGTTGTAGTCAGACAGGGTGCGCCCGTCCTCAAGCTGCTTGCCG 44763
Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661
||| | || | |||||||| || ||||| |||||||||||||| ||| || ||
Sbjct 44764 GCGAAAATCAATCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTTG 44823
Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721
|| | |||| ||| || | ||||||||| | ||| | || |||||||| || ||
Sbjct 44824 ACATTGTCGATGGTATCAGAAGACTCGACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTC 44883
Query 118722 TTTACAAAAATCTGCATGG 118740
|| ||||| || |||||||
Sbjct 44884 TTGACAAAGATTTGCATGG 44902
Score = 102 bits (112), Expect = 7e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||| ||| | || ||||| || || |||||||| ||| | ||||| ||| |||
Sbjct 44464 ACCAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCG 44523
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
||||| || || ||| | || | |||||||| || ||||| |||||||||||||| |
Sbjct 44524 AGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGA 44583
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| || || || | |||| ||| || | ||||||||| | ||| | || |||
Sbjct 44584 ATCTTGGACTTGACATTGTCGATGGTATCAGAAGACTCGACCTCAAGGGTGATGGTCTTG 44643
Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||||| || || || || || || |||||
Sbjct 44644 CCGGTGAGGGTCTTGACGAATATTTGCAT 44672
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433822014329512
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |