Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20langsethiae_20[genbank_20GCA_5F001292635.1_202015-09-16]
1,586 sequences; 37,543,021 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq391 114 1e-20
seq1088 102 9e-17
seq1221 87.8 2e-12
>seq391
Length=65998
Score = 114 bits (126), Expect = 1e-20
Identities = 142/192 (74%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052
||||| ||||| ||||| |||| ||| || ||| |||| || |||||||| || |||||
Sbjct 44710 TCCTTCTGAATGTTGTAGTCAGACAGGGTGCGCCCGTCCTCAAGCTGCTTGCCGGCGAAA 44769
Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 43111
|| | |||||||||||| | || | || |||||||||| ||| | || | |||| |
Sbjct 44770 ATCAATCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCC-TGAATCTTGGACTTGACATT 44828
Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171
| | || || || || || || | |||||||| ||||| || || ||||| ||
Sbjct 44829 GTCGATGGTATCAGAAGACTCGACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGAC 44888
Query 43172 AAAGATTTGCAT 43183
||||||||||||
Sbjct 44889 AAAGATTTGCAT 44900
Score = 86.0 bits (94), Expect = 7e-12
Identities = 162/236 (69%), Gaps = 2/236 (1%)
Strand=Plus/Plus
Query 42949 CCTATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGT 43008
|||| || || || | | ||| | |||| || | ||| |||||| || || ||||
Sbjct 44438 CCTACTGACCACCGCGGAGACGGAGGACCAGGTGAAGAGTGGACTCCTTCTGGATGTTGT 44497
Query 43009 AATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGT 43068
| || | || || || | || || |||||||| || ||||| || | |||||||||||
Sbjct 44498 AGTCGGAGAGGGTGCGGCCATCTTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGT 44557
Query 43069 CGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTC 43127
| | || | || |||||||||| ||| | || | |||| | | | || ||
Sbjct 44558 CAGGAGGAATGCCCTCCTTGTCC-TGAATCTTGGACTTGACATTGTCGATGGTATCAGAA 44616
Query 43128 GATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|| || || || | |||||||| ||||| || || ||||| || || ||||||||
Sbjct 44617 GACTCGACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAATATTTGCAT 44672
>seq1088
Length=144876
Score = 102 bits (112), Expect = 9e-17
Identities = 140/193 (73%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || || ||||| || ||| || || | || || |||||||||||||| ||
Sbjct 60676 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAA 60617
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111
|| |||||||||||||| | || | || |||||||||| ||| || |||| |||
Sbjct 60616 GATAAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 60558
Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170
| | | |||||| || ||||| || | ||||| || || ||||| || ||||| |
Sbjct 60557 TGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTAAGGGTCTTGA 60498
Query 43171 CAAAGATTTGCAT 43183
| || || |||||
Sbjct 60497 CGAAAATCTGCAT 60485
>seq1221
Length=114529
Score = 87.8 bits (96), Expect = 2e-12
Identities = 128/181 (71%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053
|||| || || ||||| || | || || || | || || |||||||| |||||||| |
Sbjct 56452 CCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCGAAGA 56393
Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113
| | |||||||||||| | || | || |||||||||| ||| || |||| |
Sbjct 56392 TCAATCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 56333
Query 43114 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 43173
| | ||||| || || || |||| |||||||| |||||||| || ||||| || |
Sbjct 56332 CGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 56273
Query 43174 A 43174
|
Sbjct 56272 A 56272
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571806263716080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |