Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20langsethiae_20[genbank_20GCA_5F001292635.1_202015-09-16] 1,586 sequences; 37,543,021 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq839 241 1e-58 seq700 123 2e-23 seq1088 100 3e-16 seq391 91.5 1e-13 seq1221 86.0 6e-12 >seq839 Length=23613 Score = 241 bits (266), Expect = 1e-58 Identities = 575/857 (67%), Gaps = 12/857 (1%) Strand=Plus/Minus Query 23027 GAGGCAAGATTGCATACGGCCACCTCGTCTTTGGA-CGT-GTACTCTACAATTTCGGTAC 23084 |||||||| ||||| || || ||||| || ||| || |||||| | ||| || || | Sbjct 13357 GAGGCAAGGTTGCAAACAGCGACCTCATCA--GGAGCGCAGTACTCAATAATCTCAGTGC 13300 Query 23085 ATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAAT 23144 | || ||| | || || || | || | |||||||| || || ||||| || Sbjct 13299 ACAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGTGAT 13240 Query 23145 CCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACA 23204 |||||||||||||| | || | || ||||| ||| | ||||| || || ||| | Sbjct 13239 CCTTGTAGAGCATGAAAGGGTTTCCAGTCTCTGTCTGGGCCTCGAGAATGGCATACCAAA 13180 Query 23205 TAGTCTGAGCGTGAACACGTCGCACGTACCTG-CCTTCTTCCTCGTACTTTTGGTACAAC 23263 ||||||| | | | | | || ||| || ||| ||||||||| | ||||| Sbjct 13179 GCTTCTGAGCCTTGATA-GACTTGCGACCCTTACCCTCTCTCTCGTACTTCTCGTACAGA 13121 Query 23264 GCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGA 23323 || || || || ||||||| ||||| || || || || | | | || ||||| ||| Sbjct 13120 GCCTCGAACTCATCACCGTAGCAGTCAGCAAGACCAGGGCACTCGTTGGGGCACATAAGA 13061 Query 23324 CTCCACATTG--AGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGT 23381 |||| | | | || || || || || |||| || ||||| || ||||| || || Sbjct 13060 GTCCAT-TCGCCATTC-TTCTCGACACGCTTCATGAAGAGATCAGGGATCCAAAGGGCCA 13003 Query 23382 AGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGT 23441 |||||| || || ||||| |||||||| || ||| ||||||| | ||| | || | Sbjct 13002 GGAACAGGTCACGAGCGCGGACCTCCTCCTTACCGTGGTTCTTTCGGAGATCAAGGAACT 12943 Query 23442 CCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGC 23501 | || || || || ||||| ||||||||||| | || || || || |||| ||| |||| Sbjct 12942 CGAAGACATCGGCGTGCCAGGGCTCGAGGTAGATAGCGAAGGCACCAGGTCGCTTGTTGC 12883 Query 23502 CGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGT 23561 | ||||| ||||||||||| || ||||||||| |||| | ||||| || |||| ||||| Sbjct 12882 CACCCTGGTCGACGTAACGAGCAGTGTTGTTGAACACACGCAGCATGGGAACGACACCGT 12823 Query 23562 TGGACGCGCCGCCTACGCCCGCCACACT-CGAACCTTTTGCTCGAACGTTGTGAACGTGG 23620 | || | || | |||| || | || || | || || | ||| |||| Sbjct 12822 TAGAAGTACC-ATTGGTCCCGGCAATGTAAGAGCCGGTGGCACGGATTCGGTGGACGTTC 12764 Query 23621 AAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATG 23680 || || || || || || || || ||||| || || || || || |||||||| Sbjct 12763 AAGCCAATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAGATA 12704 Query 23681 CCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGC 23740 || |||||||||||||| || | | || | ||| || || |||| || | | || Sbjct 12703 CCGTCGATGCTGTCCTCCTTCATATCAACAAGGAAGCATGAGGACAGCTGAGGCTGAGGG 12644 Query 23741 GTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTG 23800 ||| | || ||| ||||| ||| || || || ||| | | ||||| || ||| Sbjct 12643 GTACCAGCGTTGAATAGTGTGGGGGAAGCATGAGTGAAGAACTTGCTAGACATGAGGTTG 12584 Query 23801 TACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATC 23860 || || || | | | || || || || || ||||| | || || ||||| ||| Sbjct 12583 TATGTCTCCAAGACACGTTCGATATCATCACCCCAGATACCAACAGCAACACGCATGATC 12524 Query 23861 ATGTATTGAGGTCTCTC 23877 |||| |||||| | ||| Sbjct 12523 ATGTGTTGAGGACGCTC 12507 Score = 91.5 bits (100), Expect = 1e-13 Identities = 221/331 (67%), Gaps = 4/331 (1%) Strand=Plus/Minus Query 22241 TTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCCATATTTATCAA--TG 22298 |||| |||||| |||||| ||||| || || || ||||| ||||| | | ||| || Sbjct 14143 TTGAGAGACTGAGACTGATCAATAAAGGCACCACGGTCGGCAGCCATCTGCA-CAACCTG 14085 Query 22299 TACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCTCTAACGGTATCGATT 22358 | ||| || || ||||| || ||||||||||| | ||| || || || Sbjct 14084 T-CGCTGAGAAATCTCCCACACAGTCTTGTACAGAGCCTTGACATCGGCAGGGATGTTGG 14026 Query 22359 CGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAATCGTATCGTTCCACA 22418 ||| |||||| || ||||| | ||||| || || || | |||| ||| | Sbjct 14025 GGATGTTCTGGATAGAACCGTTCTCAGCAATGATACGGTTCTTCATAGCATCGGACCAAA 13966 Query 22419 AACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGAAACTCGCCGGACA 22478 ||| ||| || | ||| |||| || |||| || || || |||||||| | | Sbjct 13965 GACCCATGTCGACAAGATCCTTGAGAAGCCAGGGGTTGACAACCTGGAACTCGCCAGCAA 13906 Query 22479 AGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTA 22538 ||| ||||||||||| |||||||| || | || ||||| | || ||||| || || | Sbjct 13905 GGACTCGGCGTTGGTAGATGTTGGAGGTATAGGGCTCGAAGCACTCGTTGTTGCCAAGAA 13846 Query 22539 TCTGAGCGGTCGAAGCGGTCGGCATCGGCGC 22569 |||| | ||| || || ||||| || || Sbjct 13845 TCTGCGAGGTACTGGCAGTAGGCATAGGAGC 13815 >seq700 Length=246488 Score = 123 bits (136), Expect = 2e-23 Identities = 377/575 (66%), Gaps = 7/575 (1%) Strand=Plus/Plus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | |||||||| ||||| || || || || ||||| | ||| || | || || Sbjct 27434 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACAGCCGAGGAGATCGATCTT 27493 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCCC-TCAAAGAATCTGA-GAGAAAT--TTTATTAA 57685 || |||||||| || ||| | || || || | || ||| | | || || Sbjct 27494 TCCAAGGATCTCCATGACTGGAACAACCGTCTAACTG-CGGACGAGCAGTACTTCATCTC 27552 Query 57686 ACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAG 57745 ||| | | || || || ||||| |||||||||||||| |||||||| | || || | Sbjct 27553 CCACATTCTTGCTTTCTTTGCCGCCTCCGATGGTATTGTCAACGAGAACCTTGTTGAGCG 27612 Query 57746 ATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCAT 57805 ||| || || || | | ||||| ||||||| ||||| || || | || Sbjct 27613 ATTCAGCGGCGAGGTTCAGATCCCTGAGGCTCGATGCTTCTACGGTTTCCAGATCATGAT 27672 Query 57806 TGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGA 57865 || ||| | || || |||| || || || ||||| || || ||| | ||||| | Sbjct 27673 GGAGAACATCCACTCCGAAACATACTCTCTGCTCATTGACACCTACATCAAGGAGCCTGC 27732 Query 57866 CGAGA-AACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAG 57924 ||| ||| || || |||||||| | || || || || ||| |||||||| | Sbjct 27733 TCAGAGAACTTAC-CTCTTCAACGCCGTTGACACCATTCCTTGCATCCGAAAGAAGGCTG 27791 Query 57925 AGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGT 57984 | ||| | || |||||| | | | | | || ||| || | || | || | Sbjct 27792 ATTGGGCTATTCGATGGATCCAGGACAAGAACTCTTCCTTTGCCCAGCGTCTTGTTGCCT 27851 Query 57985 TCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGA 58044 | || || || || ||||| ||||| || |||||| | || || ||| | |||| Sbjct 27852 TTGCTGCTGTTGAGGGTATCTTCTTCAGCGGTGCCTTTGCTTCCATTTTCTGGCTCAAGA 27911 Query 58045 AACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTC 58104 | || || || |||||||| ||||| || |||||| | || || || |||||||||| Sbjct 27912 AGCGTGGTCTCATGCCCGGTCTGACTTTCTCTAACGAGCTCATCTCTCGTGACGAGGGTC 27971 Query 58105 TCCATACTGATTTTGCGTGCCTAATGTACTCTCAC 58139 | || || || ||||| ||||| | |||||||| Sbjct 27972 TTCACACCGACTTTGCCTGCCTCCTCCACTCTCAC 28006 >seq1088 Length=144876 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| |||||||| ||||| || || || || ||||||||| | || || || | || Sbjct 60484 CATGCAGATTTTCGTCAAGACCCTTACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTC 60543 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| | || | ||||| | || ||||||||| ||| | || || ||||| Sbjct 60544 CGACACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCA 60603 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| || || || ||||| || ||| | || || || ||||||| || || Sbjct 60604 GCAGCGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTACAA 60663 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || || ||||| || ||||| || Sbjct 60664 CATCCAGAAGGAGTCCACTCTCCACCTGGTCCT 60696 >seq391 Length=65998 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| || || ||||| || || ||||| || |||||| | || || || | || Sbjct 44901 CATGCAAATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTCGAGTCTTC 44842 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | |||| | ||||| | || ||||||||| ||| | || || ||||| Sbjct 44841 TGATACCATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCA 44782 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| | || ||||| ||||| ||| | || ||| || || || || || Sbjct 44781 GCAGCGATTGATTTTCGCCGGCAAGCAGCTTGAGGACGGGCGCACCCTGTCTGACTACAA 44722 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||| || ||||| || |||||||| || || Sbjct 44721 CATTCAGAAGGAATCAACCCTTCATCTCGTCCT 44689 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| || || ||||| || |||||| | || || || | || Sbjct 44672 ATGCAAATATTCGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTCGAGTCTTCT 44613 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | ||||| | || ||||||||| ||| | || || |||||| Sbjct 44612 GATACCATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAG 44553 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| | || ||||| ||||| ||| | ||||| || | ||| || ||| Sbjct 44552 CAGCGATTGATTTTCGCCGGCAAGCAGCTCGAAGATGGCCGCACCCTCTCCGACTACAAC 44493 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || || || |||||||| ||||| || Sbjct 44492 ATCCAGAAGGAGTCCACTCTTCACCTGGTCCT 44461 >seq1221 Length=114529 Score = 86.0 bits (94), Expect = 6e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 31201 TTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGT 31260 |||||| ||||| ||||| ||||| || |||||| |||| || || | || |||| | Sbjct 56271 TTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCAT 56330 Query 31261 CGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCT 31320 ||| | ||||| | || ||||||||| ||| | || || ||||||||||| | Sbjct 56331 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGATT 56390 Query 31321 AATATTCGCTGGCAAACAGTTGGAAGA 31347 || ||||||||||| ||| | || || Sbjct 56391 GATCTTCGCTGGCAAGCAGCTCGAGGA 56417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445757562681120