Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20langsethiae_20[genbank_20GCA_5F001292635.1_202015-09-16]
1,586 sequences; 37,543,021 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq839 241 1e-58
seq700 123 2e-23
seq1088 100 3e-16
seq391 91.5 1e-13
seq1221 86.0 6e-12
>seq839
Length=23613
Score = 241 bits (266), Expect = 1e-58
Identities = 575/857 (67%), Gaps = 12/857 (1%)
Strand=Plus/Minus
Query 23027 GAGGCAAGATTGCATACGGCCACCTCGTCTTTGGA-CGT-GTACTCTACAATTTCGGTAC 23084
|||||||| ||||| || || ||||| || ||| || |||||| | ||| || || |
Sbjct 13357 GAGGCAAGGTTGCAAACAGCGACCTCATCA--GGAGCGCAGTACTCAATAATCTCAGTGC 13300
Query 23085 ATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAAT 23144
| || ||| | || || || | || | |||||||| || || ||||| ||
Sbjct 13299 ACAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGTGAT 13240
Query 23145 CCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACA 23204
|||||||||||||| | || | || ||||| ||| | ||||| || || ||| |
Sbjct 13239 CCTTGTAGAGCATGAAAGGGTTTCCAGTCTCTGTCTGGGCCTCGAGAATGGCATACCAAA 13180
Query 23205 TAGTCTGAGCGTGAACACGTCGCACGTACCTG-CCTTCTTCCTCGTACTTTTGGTACAAC 23263
||||||| | | | | | || ||| || ||| ||||||||| | |||||
Sbjct 13179 GCTTCTGAGCCTTGATA-GACTTGCGACCCTTACCCTCTCTCTCGTACTTCTCGTACAGA 13121
Query 23264 GCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGA 23323
|| || || || ||||||| ||||| || || || || | | | || ||||| |||
Sbjct 13120 GCCTCGAACTCATCACCGTAGCAGTCAGCAAGACCAGGGCACTCGTTGGGGCACATAAGA 13061
Query 23324 CTCCACATTG--AGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGT 23381
|||| | | | || || || || || |||| || ||||| || ||||| || ||
Sbjct 13060 GTCCAT-TCGCCATTC-TTCTCGACACGCTTCATGAAGAGATCAGGGATCCAAAGGGCCA 13003
Query 23382 AGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGT 23441
|||||| || || ||||| |||||||| || ||| ||||||| | ||| | || |
Sbjct 13002 GGAACAGGTCACGAGCGCGGACCTCCTCCTTACCGTGGTTCTTTCGGAGATCAAGGAACT 12943
Query 23442 CCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGC 23501
| || || || || ||||| ||||||||||| | || || || || |||| ||| ||||
Sbjct 12942 CGAAGACATCGGCGTGCCAGGGCTCGAGGTAGATAGCGAAGGCACCAGGTCGCTTGTTGC 12883
Query 23502 CGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGT 23561
| ||||| ||||||||||| || ||||||||| |||| | ||||| || |||| |||||
Sbjct 12882 CACCCTGGTCGACGTAACGAGCAGTGTTGTTGAACACACGCAGCATGGGAACGACACCGT 12823
Query 23562 TGGACGCGCCGCCTACGCCCGCCACACT-CGAACCTTTTGCTCGAACGTTGTGAACGTGG 23620
| || | || | |||| || | || || | || || | ||| ||||
Sbjct 12822 TAGAAGTACC-ATTGGTCCCGGCAATGTAAGAGCCGGTGGCACGGATTCGGTGGACGTTC 12764
Query 23621 AAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATG 23680
|| || || || || || || || ||||| || || || || || ||||||||
Sbjct 12763 AAGCCAATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAGATA 12704
Query 23681 CCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGC 23740
|| |||||||||||||| || | | || | ||| || || |||| || | | ||
Sbjct 12703 CCGTCGATGCTGTCCTCCTTCATATCAACAAGGAAGCATGAGGACAGCTGAGGCTGAGGG 12644
Query 23741 GTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTG 23800
||| | || ||| ||||| ||| || || || ||| | | ||||| || |||
Sbjct 12643 GTACCAGCGTTGAATAGTGTGGGGGAAGCATGAGTGAAGAACTTGCTAGACATGAGGTTG 12584
Query 23801 TACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATC 23860
|| || || | | | || || || || || ||||| | || || ||||| |||
Sbjct 12583 TATGTCTCCAAGACACGTTCGATATCATCACCCCAGATACCAACAGCAACACGCATGATC 12524
Query 23861 ATGTATTGAGGTCTCTC 23877
|||| |||||| | |||
Sbjct 12523 ATGTGTTGAGGACGCTC 12507
Score = 91.5 bits (100), Expect = 1e-13
Identities = 221/331 (67%), Gaps = 4/331 (1%)
Strand=Plus/Minus
Query 22241 TTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCCATATTTATCAA--TG 22298
|||| |||||| |||||| ||||| || || || ||||| ||||| | | ||| ||
Sbjct 14143 TTGAGAGACTGAGACTGATCAATAAAGGCACCACGGTCGGCAGCCATCTGCA-CAACCTG 14085
Query 22299 TACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCTCTAACGGTATCGATT 22358
| ||| || || ||||| || ||||||||||| | ||| || || ||
Sbjct 14084 T-CGCTGAGAAATCTCCCACACAGTCTTGTACAGAGCCTTGACATCGGCAGGGATGTTGG 14026
Query 22359 CGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAATCGTATCGTTCCACA 22418
||| |||||| || ||||| | ||||| || || || | |||| ||| |
Sbjct 14025 GGATGTTCTGGATAGAACCGTTCTCAGCAATGATACGGTTCTTCATAGCATCGGACCAAA 13966
Query 22419 AACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGAAACTCGCCGGACA 22478
||| ||| || | ||| |||| || |||| || || || |||||||| | |
Sbjct 13965 GACCCATGTCGACAAGATCCTTGAGAAGCCAGGGGTTGACAACCTGGAACTCGCCAGCAA 13906
Query 22479 AGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTA 22538
||| ||||||||||| |||||||| || | || ||||| | || ||||| || || |
Sbjct 13905 GGACTCGGCGTTGGTAGATGTTGGAGGTATAGGGCTCGAAGCACTCGTTGTTGCCAAGAA 13846
Query 22539 TCTGAGCGGTCGAAGCGGTCGGCATCGGCGC 22569
|||| | ||| || || ||||| || ||
Sbjct 13845 TCTGCGAGGTACTGGCAGTAGGCATAGGAGC 13815
>seq700
Length=246488
Score = 123 bits (136), Expect = 2e-23
Identities = 377/575 (66%), Gaps = 7/575 (1%)
Strand=Plus/Plus
Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629
|| ||| | |||||||| ||||| || || || || ||||| | ||| || | || ||
Sbjct 27434 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACAGCCGAGGAGATCGATCTT 27493
Query 57630 TCTAAGGATCTGAGCGATTGGGATTCCC-TCAAAGAATCTGA-GAGAAAT--TTTATTAA 57685
|| |||||||| || ||| | || || || | || ||| | | || ||
Sbjct 27494 TCCAAGGATCTCCATGACTGGAACAACCGTCTAACTG-CGGACGAGCAGTACTTCATCTC 27552
Query 57686 ACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAG 57745
||| | | || || || ||||| |||||||||||||| |||||||| | || || |
Sbjct 27553 CCACATTCTTGCTTTCTTTGCCGCCTCCGATGGTATTGTCAACGAGAACCTTGTTGAGCG 27612
Query 57746 ATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCAT 57805
||| || || || | | ||||| ||||||| ||||| || || | ||
Sbjct 27613 ATTCAGCGGCGAGGTTCAGATCCCTGAGGCTCGATGCTTCTACGGTTTCCAGATCATGAT 27672
Query 57806 TGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGA 57865
|| ||| | || || |||| || || || ||||| || || ||| | ||||| |
Sbjct 27673 GGAGAACATCCACTCCGAAACATACTCTCTGCTCATTGACACCTACATCAAGGAGCCTGC 27732
Query 57866 CGAGA-AACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAG 57924
||| ||| || || |||||||| | || || || || ||| |||||||| |
Sbjct 27733 TCAGAGAACTTAC-CTCTTCAACGCCGTTGACACCATTCCTTGCATCCGAAAGAAGGCTG 27791
Query 57925 AGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGT 57984
| ||| | || |||||| | | | | | || ||| || | || | || |
Sbjct 27792 ATTGGGCTATTCGATGGATCCAGGACAAGAACTCTTCCTTTGCCCAGCGTCTTGTTGCCT 27851
Query 57985 TCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGA 58044
| || || || || ||||| ||||| || |||||| | || || ||| | ||||
Sbjct 27852 TTGCTGCTGTTGAGGGTATCTTCTTCAGCGGTGCCTTTGCTTCCATTTTCTGGCTCAAGA 27911
Query 58045 AACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTC 58104
| || || || |||||||| ||||| || |||||| | || || || ||||||||||
Sbjct 27912 AGCGTGGTCTCATGCCCGGTCTGACTTTCTCTAACGAGCTCATCTCTCGTGACGAGGGTC 27971
Query 58105 TCCATACTGATTTTGCGTGCCTAATGTACTCTCAC 58139
| || || || ||||| ||||| | ||||||||
Sbjct 27972 TTCACACCGACTTTGCCTGCCTCCTCCACTCTCAC 28006
>seq1088
Length=144876
Score = 100 bits (110), Expect = 3e-16
Identities = 150/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| |||||||| ||||| || || || || ||||||||| | || || || | ||
Sbjct 60484 CATGCAGATTTTCGTCAAGACCCTTACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTC 60543
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
||||| | || | ||||| | || ||||||||| ||| | || || |||||
Sbjct 60544 CGACACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCA 60603
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|||||| || || || ||||| || ||| | || || || ||||||| || ||
Sbjct 60604 GCAGCGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTACAA 60663
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
||| || || || || ||||| || ||||| ||
Sbjct 60664 CATCCAGAAGGAGTCCACTCTCCACCTGGTCCT 60696
>seq391
Length=65998
Score = 91.5 bits (100), Expect = 1e-13
Identities = 148/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
||||||||| || || ||||| || || ||||| || |||||| | || || || | ||
Sbjct 44901 CATGCAAATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTCGAGTCTTC 44842
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|| | |||| | ||||| | || ||||||||| ||| | || || |||||
Sbjct 44841 TGATACCATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCA 44782
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|||||| | || ||||| ||||| ||| | || ||| || || || || ||
Sbjct 44781 GCAGCGATTGATTTTCGCCGGCAAGCAGCTTGAGGACGGGCGCACCCTGTCTGACTACAA 44722
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
|||||| || ||||| || |||||||| || ||
Sbjct 44721 CATTCAGAAGGAATCAACCCTTCATCTCGTCCT 44689
Score = 89.7 bits (98), Expect = 5e-13
Identities = 147/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||| ||||| ||||| || || ||||| || |||||| | || || || | ||
Sbjct 44672 ATGCAAATATTCGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTCGAGTCTTCT 44613
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | |||| | ||||| | || ||||||||| ||| | || || ||||||
Sbjct 44612 GATACCATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAG 44553
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
||||| | || ||||| ||||| ||| | ||||| || | ||| || |||
Sbjct 44552 CAGCGATTGATTTTCGCCGGCAAGCAGCTCGAAGATGGCCGCACCCTCTCCGACTACAAC 44493
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
|| || || || || |||||||| ||||| ||
Sbjct 44492 ATCCAGAAGGAGTCCACTCTTCACCTGGTCCT 44461
>seq1221
Length=114529
Score = 86.0 bits (94), Expect = 6e-12
Identities = 107/147 (73%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 31201 TTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGT 31260
|||||| ||||| ||||| ||||| || |||||| |||| || || | || |||| |
Sbjct 56271 TTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCAT 56330
Query 31261 CGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCT 31320
||| | ||||| | || ||||||||| ||| | || || ||||||||||| |
Sbjct 56331 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGATT 56390
Query 31321 AATATTCGCTGGCAAACAGTTGGAAGA 31347
|| ||||||||||| ||| | || ||
Sbjct 56391 GATCTTCGCTGGCAAGCAGCTCGAGGA 56417
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445757562681120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |