Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20langsethiae_20[genbank_20GCA_5F001292635.1_202015-09-16]
1,586 sequences; 37,543,021 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq700 181 1e-40
seq839 116 5e-21
>seq700
Length=246488
Score = 181 bits (200), Expect = 1e-40
Identities = 375/557 (67%), Gaps = 6/557 (1%)
Strand=Plus/Minus
Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641
|| || || ||| ||| ||||||||||| | | || | |||||||| || || ||
Sbjct 27990 CAGGCAAAGTCGGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTAGAGAAAGTCAGA 27931
Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701
|||||||| || |||||||| || ||||| || |||||||| || | ||| ||||||
Sbjct 27930 CCGGGCATGAGACCACGCTTCTTGAGCCAGAAAATGGAAGCAAAGGCACCGCTGAAGAAG 27871
Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCA---TAACCGGCGCTGTCATGT 33758
|| || || || ||||||||||||| ||| | || || || | |||| ||
Sbjct 27870 ATACCCTCAACAGCAGCAAAGGCAACAAGACGCTGGGCAAAGGAAGAGTTCTTGTCCTGG 27811
Query 33759 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33818
||||| ||||||||| ||||||||| | ||||| || || || | ||| ||
Sbjct 27810 ATCCATCGAATAGCCCAATCAGCCTTCTTTCGGATGCAAGGAATGGTGTCAACGGCGTTG 27751
Query 33819 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33878
||||| || || | | | | || || | || || || || | ||| || ||
Sbjct 27750 AAGAGGTAAGTTCTCTGAGCAGGCTCCTTGATGTAGGTGTCAATGAGCAGAGAGTATGTT 27691
Query 33879 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33938
|| || || ||||| || || ||||| || |||||||| |||| |||||| | |||
Sbjct 27690 TCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCATCGAGCCTCAGGGATC 27631
Query 33939 TGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCA 33998
|| || || | ||||| || | | || || || || || ||||| ||| |||
Sbjct 27630 TGAACCTCGCCGCTGAATCGCTCAACAAGGTTCTCGTTGACAATACCATCGGAGGCGGCA 27571
Query 33999 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTTATTCCAA 34055
|| || || | | || || || || | ||||| | |||| | || |||||
Sbjct 27570 AAGAAAGCAAGAATGTGGGAGATGAAGTACTGCTCGTCCGCAGTTAGACGGTTGTTCCAG 27511
Query 34056 TCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 34115
|||| || ||| || || | ||| | || || ||||||| || || ||||| |||||
Sbjct 27510 TCATGGAGATCCTTGGAAAGATCGATCTCCTCGGCTGTCCAGAAGGAAGCCTCGGCCTTC 27451
Query 34116 TTATACATATTCCAGAT 34132
|| ||||| | ||||||
Sbjct 27450 TTGTACATTTGCCAGAT 27434
>seq839
Length=23613
Score = 116 bits (128), Expect = 5e-21
Identities = 559/871 (64%), Gaps = 22/871 (3%)
Strand=Plus/Minus
Query 62949 GATGCCAGATTACACACGGCTACCTCATTAGCATCCGCA-TATTGTATTATCTCAGTGCA 63007
|| || || || || || || ||||||| || | | ||| || | || |||||||||||
Sbjct 13357 GAGGCAAGGTTGCAAACAGCGACCTCATCAGGAGC-GCAGTACTCAATAATCTCAGTGCA 13299
Query 63008 AAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 63067
|| || | ||| || || | || | ||| || ||||| ||| || |||
Sbjct 13298 CAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGTGATC 13239
Query 63068 CTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 63127
||| || || ||||| || | ||||| || |||| | || | ||| || | ||| |
Sbjct 13238 CTTGTAGAGCATGAAAGGGTTTCCAGTCTCTGTCTGGGCCTCGAGAATGGCATACCAAA- 13180
Query 63128 GACTC-GAGCCTTTATTATAGATTTGTATCTCCTT----TCTCTTTCGTA--TAGAGTAT 63180
| || ||||||| || ||| ||| | |||| ||||| ||||| | |||
Sbjct 13179 GCTTCTGAGCCTTGAT---AGACTTGCGAC-CCTTACCCTCTCTCTCGTACTTCTCGTAC 13124
Query 63181 ACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAAT-CTAGGACATTCATCCGGACAC 63239
| | | |||||||| || || | || | ||| | ||| || || | || |||
Sbjct 13123 AGAGCC--TCGAACTCATCACCGTAG-CAGTCAGCAAGACCAGGGCACTCGTTGGGGCAC 13067
Query 63240 ATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGA 63299
|| | | ||| || || | | || || || ||||| ||||||||||| ||||||||
Sbjct 13066 ATAAGAGTCCATTCGCCATTCTTCTCGACACGCTTCATGAAGAGATCAGGGATCCAAAGG 13007
Query 63300 GCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGG 63359
|| | || || || | | | ||||| || || |||||| ||||| |||
Sbjct 13006 GCCAGGAACAGGTCACGAGCGCGGACCTCCTCCTTACCGTGGTTCTTTCGGAGATCAAGG 12947
Query 63360 AACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTG 63419
||| | | | ||| | ||||| || || | ||| || || | | ||||| || |||
Sbjct 12946 AACTCGAAGACATCGGCGTGCCAGGGCTCGAGGTAGATAGCGAAGGCACCAGGTCGCTTG 12887
Query 63420 TTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATA 63479
|| || ||||| || | ||| | ||| ||||| || | || | || ||| |||| | |
Sbjct 12886 TTGCCACCCTGGTCGACGTAACGAGCAGTGTTGTTGAACACACGCAGCATGGGAACGACA 12827
Query 63480 CCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATT 63539
||||| || |||||||||| |||| || || || ||||||| || | |
Sbjct 12826 CCGTTAGAAGTACCATTGGTCCCGGCAATGTAAGAGCCGGTGGCACGGAT-TCGGTGGAC 12768
Query 63540 GAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATA 63598
| | | || || || || ||||| || || || | || || || | || || ||
Sbjct 12767 GTTCAAGCCAATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTA 12708
Query 63599 GATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACG 63658
||| || || ||||| || || |||| | || || || || |||| || | |
Sbjct 12707 GATACCGTCGATGCTGTCCTCCTTCATATCAACAAGGAAGCATGAGGACAGCTGAGGCTG 12648
Query 63659 AGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAG 63718
|| || || || || |||| || || ||||| || || || | || ||| | ||
Sbjct 12647 AGGGGTACCAGCGTTGAATAGTGTGGGGGAAGCATGAGTGAAGAACTTGCTAGACATGAG 12588
Query 63719 ATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCA 63777
||||| ||||| | | || ||||| || | || || || || |||||||
Sbjct 12587 GTTGTATGTCTCCAAGACACGTTCGATATCATCACCCCAG-ATACCAACAGCAACACGCA 12529
Query 63778 TTAACATGTGCTGAGGTCTTTCAACAATTTT 63808
| | |||||| ||||| | ||| |||||||
Sbjct 12528 TGATCATGTGTTGAGGACGCTCAGCAATTTT 12498
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629805113866080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |