Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20langsethiae_20[genbank_20GCA_5F001292635.1_202015-09-16]
1,586 sequences; 37,543,021 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq700 149 8e-31
seq839 116 5e-21
>seq700
Length=246488
Score = 149 bits (164), Expect = 8e-31
Identities = 368/557 (66%), Gaps = 6/557 (1%)
Strand=Plus/Minus
Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217
|| || || ||| ||| ||||||||||| | | || | ||||| || || || ||
Sbjct 27990 CAGGCAAAGTCGGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTAGAGAAAGTCAGA 27931
Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 36277
|||||||| || |||||||| || ||||| || ||||| ||||| | || |||||
Sbjct 27930 CCGGGCATGAGACCACGCTTCTTGAGCCAGAAAATGGAAGCAAAGGCACCGCTGAAGAAG 27871
Query 36278 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCA---TAACCGGCACTGTCATGT 36334
|| || || || || |||||||||| ||| | || || || | |||| ||
Sbjct 27870 ATACCCTCAACAGCAGCAAAGGCAACAAGACGCTGGGCAAAGGAAGAGTTCTTGTCCTGG 27811
Query 36335 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 36394
||||| ||||||||| ||||||||| | ||||| || || || | || ||
Sbjct 27810 ATCCATCGAATAGCCCAATCAGCCTTCTTTCGGATGCAAGGAATGGTGTCAACGGCGTTG 27751
Query 36395 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATT 36454
||||| || || | | | | || || | || || ||||| | ||| || ||
Sbjct 27750 AAGAGGTAAGTTCTCTGAGCAGGCTCCTTGATGTAGGTGTCAATGAGCAGAGAGTATGTT 27691
Query 36455 TCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 36514
|| || || ||||| || || || || || |||||||| |||| |||||| | |||
Sbjct 27690 TCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCATCGAGCCTCAGGGATC 27631
Query 36515 TGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 36574
|| || || | ||||| || | | || || || || || || || ||| |||
Sbjct 27630 TGAACCTCGCCGCTGAATCGCTCAACAAGGTTCTCGTTGACAATACCATCGGAGGCGGCA 27571
Query 36575 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTA---GTTTATTCCAA 36631
|| || || | | || || || || | |||| | |||| | || |||||
Sbjct 27570 AAGAAAGCAAGAATGTGGGAGATGAAGTACTGCTCGTCCGCAGTTAGACGGTTGTTCCAG 27511
Query 36632 TCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 36691
|||| || ||| || || | ||| | || || ||||||| || || ||||| |||||
Sbjct 27510 TCATGGAGATCCTTGGAAAGATCGATCTCCTCGGCTGTCCAGAAGGAAGCCTCGGCCTTC 27451
Query 36692 TTATACATATTCCAGAT 36708
|| ||||| | ||||||
Sbjct 27450 TTGTACATTTGCCAGAT 27434
>seq839
Length=23613
Score = 116 bits (128), Expect = 5e-21
Identities = 371/564 (66%), Gaps = 16/564 (3%)
Strand=Plus/Minus
Query 65742 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA-TATTGTATTATCTCAGTGCA 65800
|| || || || ||||| || ||||||| || | | ||| || | || |||||||||||
Sbjct 13357 GAGGCAAGGTTGCAAACAGCGACCTCATCAGGAGC-GCAGTACTCAATAATCTCAGTGCA 13299
Query 65801 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 65860
|| || | |||||| || | || | ||| || ||||| ||| || |||
Sbjct 13298 CAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGTGATC 13239
Query 65861 CTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 65920
||| || || ||||| || | ||||| || |||| | || | ||| || | ||| |
Sbjct 13238 CTTGTAGAGCATGAAAGGGTTTCCAGTCTCTGTCTGGGCCTCGAGAATGGCATACCAAA- 13180
Query 65921 GACTC-GAGCCTTTATTATAGATTTGTATCTCTTT---TCTCTTTCGTA--TAGTGTATA 65974
| || ||||||| || ||| ||| | ||| ||||| ||||| | ||| |
Sbjct 13179 GCTTCTGAGCCTTGAT---AGACTTGCGACCCTTACCCTCTCTCTCGTACTTCTCGTACA 13123
Query 65975 CAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAAT-CCAGGACATTCATCCGGACACA 66033
| | |||||||| || || | || | ||| ||||| || || | || ||||
Sbjct 13122 GAGCC--TCGAACTCATCACCGTAG-CAGTCAGCAAGACCAGGGCACTCGTTGGGGCACA 13066
Query 66034 TCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAG 66093
| | | ||| || || | | || || || ||||| ||||||||||| |||||||| |
Sbjct 13065 TAAGAGTCCATTCGCCATTCTTCTCGACACGCTTCATGAAGAGATCAGGGATCCAAAGGG 13006
Query 66094 CTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGA 66153
| | || | || | | | ||||| || || |||||| ||||| ||||
Sbjct 13005 CCAGGAACAGGTCACGAGCGCGGACCTCCTCCTTACCGTGGTTCTTTCGGAGATCAAGGA 12946
Query 66154 ACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGT 66213
|| | | | ||| ||||| || || | ||| || || | | ||||| || ||||
Sbjct 12945 ACTCGAAGACATCGGCGTGCCAGGGCTCGAGGTAGATAGCGAAGGCACCAGGTCGCTTGT 12886
Query 66214 TTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATAC 66273
| || ||||| || | ||| | ||| ||||| || | || | || ||| |||| | ||
Sbjct 12885 TGCCACCCTGGTCGACGTAACGAGCAGTGTTGTTGAACACACGCAGCATGGGAACGACAC 12826
Query 66274 CATTGGATGTACCATTGGTCCCGG 66297
| || || ||||||||||||||||
Sbjct 12825 CGTTAGAAGTACCATTGGTCCCGG 12802
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658159751724240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |