Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20langsethiae_20[genbank_20GCA_5F001292635.1_202015-09-16] 1,586 sequences; 37,543,021 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq700 304 2e-77 seq839 143 4e-29 >seq700 Length=246488 Score = 304 bits (336), Expect = 2e-77 Identities = 582/844 (69%), Gaps = 23/844 (3%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| |||||||||| ||||| |||| ||||| ||||| | ||| ||| ||||||| Sbjct 27434 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACAGCCGAGGAGATCGATCTT 27493 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 |||||||| || | || ||| | | ||| | |||| |||| | || || || Sbjct 27494 TCCAAGGATCTCCATGACTGGAACAACCGTCTAACTGCGGACGAGCAGTACTTCATCTCC 27553 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACG 125197 |||||| | || |||||||||| ||||||||| || |||||||| || || ||||| || Sbjct 27554 CACATTCTTGCTTTCTTTGCCGCCTCCGATGGTATTGTCAACGAGAACCTTGTTGAG-CG 27612 Query 125198 ATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCATGA 125256 |||| ||| | || || |||| ||| ||||| ||||| ||||| ||||||| Sbjct 27613 ATTCAGCGGCGAGGTTCAGATCCCTGAGGC-TCGATGCTTCTACGGTTTCCAGATCATGA 27671 Query 125257 TTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC-G 125315 | |||||| | ||||| |||| |||||| || ||||||| ||||| || || | Sbjct 27672 TGGAGAACATCCACTCCGAAACATACTCTCTGCTCATTGACACCTACATCAAGGAGCCTG 27731 Query 125316 CAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCT 125375 | | ||| | ||||| ||||| | ||||| | || | || || || |||||| Sbjct 27732 CTCAGAGAACTTAC-CTCTTCAACGCCGTTGACACCATTCCTTGCATCCGAAAGAAGGCT 27790 Query 125376 CAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCA 125435 | |||| ||||| |||||| | ||| | || ||||| | ||| | | || || || Sbjct 27791 GATTGGGCTATTCGATGGATCCAGGACAAGAACTCTTCCTTTGCCCAGCGTCTTGTTGCC 27850 Query 125436 TTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAG 125495 || || || || ||||| |||||||| ||| ||||| |||| || ||||||||| Sbjct 27851 TTTGCTGCTGTTGAGGGTATCTTCTTCAGCGGTGCCTTTGCTTCCATTTTCTGGCTCAAG 27910 Query 125496 AAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGC 125555 ||||| || ||||||||||| ||||| | ||||||| | || ||||| |||||||| Sbjct 27911 AAGCGTGGTCTCATGCCCGGTCTGACTTTCTCTAACGAGCTCATCTCTCGTGACGAGGGT 27970 Query 125556 CTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATCC 125615 || ||| ||||||||| || || | ||| | | | | || | | || Sbjct 27971 CTTCACACCGACTTTGCCTGCCTCCT------CCACTCT---CACCTCAAGGGACGTGCC 28021 Query 125616 AGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTA 125675 ||| | | | | || |||| | ||||||||||| | || || || |||| || Sbjct 28022 AGCAAGCAGATGATCCAGGACATCATCACCGATGCCGTTACCATTGAGCAGAAGTTCCTC 28081 Query 125676 ACCGAATCCCTACCGGTCAGC-ATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACAT 125734 || || | || || | || || | |||||||||| || || ||| ||||||| Sbjct 28082 ACTGAGGCTCT-CCCTTGTGCTCTGCTAGGCATGAACTCGAACCTCATGAAGCAGTACAT 28140 Query 125735 AGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC--CG-CAAGATTTACAACGC 125791 ||||| || || |||||||| || || | ||| || ||| | ||||| || Sbjct 28141 CGAGTTCGTCGCTGATCGTCTGCT---CGTCGCCCTCGGCAACGAGAAGGTGTACAAGGC 28197 Query 125792 CAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGA 125851 || || ||||| || |||||| | ||| || || | || ||||||||||||||||| Sbjct 28198 CACCAACCCCTTCGACTTCATGGAGAACATCTCTCTTGGTGGCAAGACCAACTTTTTCGA 28257 Query 125852 GAAG 125855 |||| Sbjct 28258 GAAG 28261 >seq839 Length=23613 Score = 143 bits (158), Expect = 4e-29 Identities = 318/475 (67%), Gaps = 8/475 (2%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| ||||| || || || || || | || ||||| | || || |||||||| || Sbjct 12876 CAGGGTGGCAACAAGCGACCTGGTGCCTTCGCTATCTACCTCGAGCCCTGGCACGCCGAT 12935 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || || || || | || | || || ||| || || |||| || || | ||| Sbjct 12936 GTCTTCGAGTTCCTTGATCTCCGAAAGAACCACGGTAAGGAGGAGGTCCGCGCTCGTGAC 12995 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 |||| || || ||| | || ||| | ||||||||||| ||| | | |||| | Sbjct 12996 CTGTTCCTGGCCCTTTGGATCCCTGATCTCTTCATGAAGCGTGTCGAGAAGAATGGCGAA 13055 Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115 |||| || ||||||||| || || || ||||| | || |||| || || ||||| Sbjct 13056 TGGACTCTTATGTGCCCCAACGAGTGCCCTGGTCTTGCTGACTGCTACGGTGATGAGTTC 13115 Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGAGTCGATGCACG- 97174 ||||| |||| | |||||| |||||| || | | | |||| || | | Sbjct 13116 GAGGCTCTGTACGAGAAGTACGAGAGAGAGGG----TAAGGGTCGCAAGTCTATCAAGGC 13171 Query 97175 --AGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCT 97231 |||| || ||| | ||||| | ||| ||| ||||||||||| || | ||| || Sbjct 13172 TCAGAAGCTTTGGTATGCCATTCTCGAGGCCCAGACAGAGACTGGAAACCCTTTCATGCT 13231 Query 97232 CTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTC 97291 |||||||||| | || ||||| ||||||||| || | || |||||| |||| Sbjct 13232 CTACAAGGATCACTGCAACCGCAAGAGCAACCAAAAGAACCTTGGTACCATCCGAAGCTC 13291 Query 97292 CAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGC 97346 ||| |||||||| || ||| | |||||| | |||| || ||| || |||||| Sbjct 13292 CAACCTGTGCACTGAGATTATTGAGTACTGCGCTCCTGATGAGGTCGCTGTTTGC 13346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741044508501360