Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20langsethiae_20[genbank_20GCA_5F001292635.1_202015-09-16]
1,586 sequences; 37,543,021 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq700 172 7e-38
seq839 116 5e-21
>seq700
Length=246488
Score = 172 bits (190), Expect = 7e-38
Identities = 373/557 (67%), Gaps = 6/557 (1%)
Strand=Plus/Minus
Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363
|| || || ||| ||| ||||||||||| | | || || ||||| || || || ||
Sbjct 27990 CAGGCAAAGTCGGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTAGAGAAAGTCAGA 27931
Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423
|||||||| || |||||||| || ||||| || |||||||| || | || ||||||
Sbjct 27930 CCGGGCATGAGACCACGCTTCTTGAGCCAGAAAATGGAAGCAAAGGCACCGCTGAAGAAG 27871
Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCA---TAACCGGCGCTGTCATGT 33480
|| || || || ||||||||||||| ||| | || || || | |||| ||
Sbjct 27870 ATACCCTCAACAGCAGCAAAGGCAACAAGACGCTGGGCAAAGGAAGAGTTCTTGTCCTGG 27811
Query 33481 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33540
||||| ||||||||| ||||||||| | ||||| || || || | ||| ||
Sbjct 27810 ATCCATCGAATAGCCCAATCAGCCTTCTTTCGGATGCAAGGAATGGTGTCAACGGCGTTG 27751
Query 33541 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33600
||||| || || | | | | || || | || || || || | ||| || ||
Sbjct 27750 AAGAGGTAAGTTCTCTGAGCAGGCTCCTTGATGTAGGTGTCAATGAGCAGAGAGTATGTT 27691
Query 33601 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33660
|| || || ||||| || || ||||| || |||||||| |||| |||||| | |||
Sbjct 27690 TCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCATCGAGCCTCAGGGATC 27631
Query 33661 TGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCA 33720
|| || || | ||||| || | | || || || || || || || ||| |||
Sbjct 27630 TGAACCTCGCCGCTGAATCGCTCAACAAGGTTCTCGTTGACAATACCATCGGAGGCGGCA 27571
Query 33721 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTTATTCCAA 33777
|| || || | | || || || || | ||||| | |||| | || |||||
Sbjct 27570 AAGAAAGCAAGAATGTGGGAGATGAAGTACTGCTCGTCCGCAGTTAGACGGTTGTTCCAG 27511
Query 33778 TCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 33837
|||| || ||| || || | ||| | || || ||||||| || || ||||| |||||
Sbjct 27510 TCATGGAGATCCTTGGAAAGATCGATCTCCTCGGCTGTCCAGAAGGAAGCCTCGGCCTTC 27451
Query 33838 TTATACATGTTCCAGAT 33854
|| ||||| | ||||||
Sbjct 27450 TTGTACATTTGCCAGAT 27434
>seq839
Length=23613
Score = 116 bits (128), Expect = 5e-21
Identities = 510/792 (64%), Gaps = 20/792 (3%)
Strand=Plus/Minus
Query 62898 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA-TATTGTATTATCTCAGTGCA 62956
|| || || || ||||| || ||||||| || | | ||| || | || |||||||||||
Sbjct 13357 GAGGCAAGGTTGCAAACAGCGACCTCATCAGGAGC-GCAGTACTCAATAATCTCAGTGCA 13299
Query 62957 AAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 63016
|| || | ||| || || | || | ||| || ||||| ||| || |||
Sbjct 13298 CAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGTGATC 13239
Query 63017 CTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 63076
||| || || ||||| || | ||||| || |||| | || | ||| || | ||| |
Sbjct 13238 CTTGTAGAGCATGAAAGGGTTTCCAGTCTCTGTCTGGGCCTCGAGAATGGCATACCAAA- 13180
Query 63077 GACTC-GAGCCTTTATTATAGATTTGTATCTCCTT----TCTCTTTCGTA--TAGTGTAT 63129
| || ||||||| || ||| ||| | |||| ||||| ||||| | |||
Sbjct 13179 GCTTCTGAGCCTTGAT---AGACTTGCGAC-CCTTACCCTCTCTCTCGTACTTCTCGTAC 13124
Query 63130 ACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAAT-CCAGGACATTCATCCGGACAC 63188
| | | |||||||| || || | || | ||| ||||| || || | || |||
Sbjct 13123 AGAGCC--TCGAACTCATCACCGTAG-CAGTCAGCAAGACCAGGGCACTCGTTGGGGCAC 13067
Query 63189 ATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGA 63248
|| | | ||| || || | | || || || ||||| ||||||||||| ||||||||
Sbjct 13066 ATAAGAGTCCATTCGCCATTCTTCTCGACACGCTTCATGAAGAGATCAGGGATCCAAAGG 13007
Query 63249 GCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGG 63308
|| | || || || | | | ||||| || || |||||| ||||| |||
Sbjct 13006 GCCAGGAACAGGTCACGAGCGCGGACCTCCTCCTTACCGTGGTTCTTTCGGAGATCAAGG 12947
Query 63309 AACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTG 63368
||| | | | ||| | ||||| || || | ||| || || | | ||||| || |||
Sbjct 12946 AACTCGAAGACATCGGCGTGCCAGGGCTCGAGGTAGATAGCGAAGGCACCAGGTCGCTTG 12887
Query 63369 TTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATA 63428
|| || ||||| || | ||| | ||| ||||| || | || | || ||| |||| | |
Sbjct 12886 TTGCCACCCTGGTCGACGTAACGAGCAGTGTTGTTGAACACACGCAGCATGGGAACGACA 12827
Query 63429 CCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATT 63488
||||| || |||||||||| |||| || || || ||||||| || | |
Sbjct 12826 CCGTTAGAAGTACCATTGGTCCCGGCAATGTAAGAGCCGGTGGCACGGAT-TCGGTGGAC 12768
Query 63489 GAT-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATA 63547
| | | || || || || ||||| || || || | || || || | || || ||
Sbjct 12767 GTTCAAGCCAATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTA 12708
Query 63548 GATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACG 63607
|||||| || ||||| || || |||| | || || || || |||| || | |
Sbjct 12707 GATACCGTCGATGCTGTCCTCCTTCATATCAACAAGGAAGCATGAGGACAGCTGAGGCTG 12648
Query 63608 ACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAG 63667
| || || || || |||| || || ||||| || || || | || ||| | ||
Sbjct 12647 AGGGGTACCAGCGTTGAATAGTGTGGGGGAAGCATGAGTGAAGAACTTGCTAGACATGAG 12588
Query 63668 ATTGTACGTCTC 63679
||||| |||||
Sbjct 12587 GTTGTATGTCTC 12576
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622934850071760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |