Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20langsethiae_20[genbank_20GCA_5F001292635.1_202015-09-16] 1,586 sequences; 37,543,021 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq700 158 2e-33 seq839 127 3e-24 >seq700 Length=246488 Score = 158 bits (174), Expect = 2e-33 Identities = 370/557 (66%), Gaps = 6/557 (1%) Strand=Plus/Minus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || || || ||| ||| ||||||||||| | | || | ||||| || || || || Sbjct 27990 CAGGCAAAGTCGGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTAGAGAAAGTCAGA 27931 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 32780 |||||||| || |||||||| || ||||| || ||||| ||||| | || ||||| Sbjct 27930 CCGGGCATGAGACCACGCTTCTTGAGCCAGAAAATGGAAGCAAAGGCACCGCTGAAGAAG 27871 Query 32781 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCA---TAACCGGCGCTGTCATGT 32837 || || || || || |||||||||| ||| | || || || | |||| || Sbjct 27870 ATACCCTCAACAGCAGCAAAGGCAACAAGACGCTGGGCAAAGGAAGAGTTCTTGTCCTGG 27811 Query 32838 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 32897 ||||| ||||||||| ||||||||| | ||||| || || || | || || Sbjct 27810 ATCCATCGAATAGCCCAATCAGCCTTCTTTCGGATGCAAGGAATGGTGTCAACGGCGTTG 27751 Query 32898 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATT 32957 ||||| || || | | | | || || | || || ||||| | ||| || || Sbjct 27750 AAGAGGTAAGTTCTCTGAGCAGGCTCCTTGATGTAGGTGTCAATGAGCAGAGAGTATGTT 27691 Query 32958 TCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATC 33017 || || || ||||| || || || || || ||||||||||||| |||||| | ||| Sbjct 27690 TCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCATCGAGCCTCAGGGATC 27631 Query 33018 TGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 33077 || || || | ||||| || | | || || || || || || || ||| ||| Sbjct 27630 TGAACCTCGCCGCTGAATCGCTCAACAAGGTTCTCGTTGACAATACCATCGGAGGCGGCA 27571 Query 33078 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTTATTCCAA 33134 || || || | | || || || || | ||||| | |||| | || ||||| Sbjct 27570 AAGAAAGCAAGAATGTGGGAGATGAAGTACTGCTCGTCCGCAGTTAGACGGTTGTTCCAG 27511 Query 33135 TCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 33194 |||| || ||| || || | ||| | || || ||||||| || || ||||| ||||| Sbjct 27510 TCATGGAGATCCTTGGAAAGATCGATCTCCTCGGCTGTCCAGAAGGAAGCCTCGGCCTTC 27451 Query 33195 TTATACATATTCCAGAT 33211 || ||||| | |||||| Sbjct 27450 TTGTACATTTGCCAGAT 27434 >seq839 Length=23613 Score = 127 bits (140), Expect = 3e-24 Identities = 509/790 (64%), Gaps = 16/790 (2%) Strand=Plus/Minus Query 62753 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA-TATTGTATTATCTCAGTGCA 62811 || || || || ||||| || ||||||| || | | ||| || | || ||||||||||| Sbjct 13357 GAGGCAAGGTTGCAAACAGCGACCTCATCAGGAGC-GCAGTACTCAATAATCTCAGTGCA 13299 Query 62812 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 62871 || || | |||||| || | || | ||| || ||||| ||| || ||| Sbjct 13298 CAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGTGATC 13239 Query 62872 CTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 62931 ||| || || ||||| || | ||||| || |||| | || | ||| || | ||| | Sbjct 13238 CTTGTAGAGCATGAAAGGGTTTCCAGTCTCTGTCTGGGCCTCGAGAATGGCATACCAAA- 13180 Query 62932 GACTC-GAGCCTTTATTATAGATTTGTATCTCTTT---TCTCTTTCGTA--TAGTGTATA 62985 | || ||||||| || ||| ||| | ||| ||||| ||||| | ||| | Sbjct 13179 GCTTCTGAGCCTTGAT---AGACTTGCGACCCTTACCCTCTCTCTCGTACTTCTCGTACA 13123 Query 62986 CAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACAT 63045 | | |||||||| || || | | | || ||||| || || | || ||||| Sbjct 13122 GAGCC--TCGAACTCATCACCGTAGCAGTCAGCAAGACCAGGGCACTCGTTGGGGCACAT 13065 Query 63046 CAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC 63105 | | ||| || || | | || || || ||||| ||||||||||| |||||||| || Sbjct 13064 AAGAGTCCATTCGCCATTCTTCTCGACACGCTTCATGAAGAGATCAGGGATCCAAAGGGC 13005 Query 63106 TATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 63165 | || || || | | | ||||| || || |||||| ||||| ||||| Sbjct 13004 CAGGAACAGGTCACGAGCGCGGACCTCCTCCTTACCGTGGTTCTTTCGGAGATCAAGGAA 12945 Query 63166 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTT 63225 | | | | ||| | ||||| || || | ||| || || | | ||||| || ||||| Sbjct 12944 CTCGAAGACATCGGCGTGCCAGGGCTCGAGGTAGATAGCGAAGGCACCAGGTCGCTTGTT 12885 Query 63226 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63285 || ||||| || | ||| | ||| ||||| || | || | || ||| |||| | ||| Sbjct 12884 GCCACCCTGGTCGACGTAACGAGCAGTGTTGTTGAACACACGCAGCATGGGAACGACACC 12825 Query 63286 ATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63345 || || |||||||||||||| | || || || ||||||| || | | | Sbjct 12824 GTTAGAAGTACCATTGGTCCCGGCAATGTAAGAGCCGGTGGCACGGAT-TCGGTGGACGT 12766 Query 63346 T-AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGA 63404 | | || || || || ||||| || || || | || || || | ||||| |||| Sbjct 12765 TCAAGCCAATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAGA 12706 Query 63405 TGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAC 63464 | || || || || || ||| |||| | || || || || |||| || | || Sbjct 12705 TACCGTCGATGCTGTCCTCCTTCATATCAACAAGGAAGCATGAGGACAGCTGAGGCTGAG 12646 Query 63465 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGAT 63524 || || || || |||| || || ||||| ||||| || | || ||| | || | Sbjct 12645 GGGTACCAGCGTTGAATAGTGTGGGGGAAGCATGAGTGAAGAACTTGCTAGACATGAGGT 12586 Query 63525 TGTACGTCTC 63534 |||| ||||| Sbjct 12585 TGTATGTCTC 12576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633619438245600