Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20langsethiae_20[genbank_20GCA_5F001292635.1_202015-09-16] 1,586 sequences; 37,543,021 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq700 127 4e-24 seq839 114 3e-20 seq765 96.9 7e-15 >seq700 Length=246488 Score = 127 bits (140), Expect = 4e-24 Identities = 312/471 (66%), Gaps = 14/471 (3%) Strand=Plus/Minus Query 251542 TGATATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCC 251601 || || |||| ||||| ||||| || || | |||||| | |||||||| |||| Sbjct 28278 TGGTAGTCAGCAACACGCTTCTCGAAAAAGTTGGTCTTGCCACCAAGAGAGATGTTCTCC 28219 Query 251602 ATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATG 251661 ||||||||||||||||| ||||| |||||| ||| | ||| || || |||| | Sbjct 28218 ATGAAGTCGAAGGGGTTGGTGGCCTTGTACACCTTCTCGTTGCCGAGGGCGACGAGCAGA 28159 Query 251662 CGGTCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGA 251721 || || || || ||||| | ||||| ||| || | ||||||||||| | || | | Sbjct 28158 CGATCAGCGACGAACTCGATGTACTGCTTCATGAGGTTCGAGTTCATGCCTAGCAGAGCA 28099 Query 251722 CAAGGAATTGCCTCACAGATGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCC 251781 ||||| | |||||| || ||| | || || ||| ||| || || | || || Sbjct 28098 CAAGGGAGAGCCTCAGTGAGGAACTTCTGCTCAATGGTAACGGCATCGGTGATGATGTCC 28039 Query 251782 T---TCACCTG-TGCCAGAGACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAA 251837 | ||| ||| | | | || | || || | |||| ||||| | |||| Sbjct 28038 TGGATCATCTGCTTGCTGGCACGTC----CCTTGAGGTGAGAGTGGAGGAGGCAGGCAAA 27983 Query 251838 CTGTTGGTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCAT 251897 | ||| ||||||||||| ||| ||||| |||||| || | | ||| || ||||| Sbjct 27982 GTCGGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTAGAGAAAGTCAGACCGGGCAT 27923 Query 251898 CACCCCACGGTTCCTGAGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTC 251957 | ||||| ||| |||||||||| || | ||||| || ||| | | |||||| Sbjct 27922 GAGACCACGCTTCTTGAGCCAGAAAATGGAAGCAAAGGCACCGCTGAAGAAGATACCCTC 27863 Query 251958 GACACACACCCATGCAACAAGGCGCTCAGCAAACGA------CTTGTCCTG 252002 ||| | | |||||||| |||| ||||| || ||||||||| Sbjct 27862 AACAGCAGCAAAGGCAACAAGACGCTGGGCAAAGGAAGAGTTCTTGTCCTG 27812 >seq839 Length=23613 Score = 114 bits (126), Expect = 3e-20 Identities = 417/643 (65%), Gaps = 11/643 (2%) Strand=Plus/Minus Query 293115 CTGCGTCTGATCGACAAAGGCACCACGATCAGCAGCGAGGTCAATCAC-TGTCTTCATAG 293173 ||| | |||||| | |||||||||||| || ||||| | | | || |||| | || Sbjct 14135 CTGAGACTGATCAATAAAGGCACCACGGTCGGCAGCCATCTGCACAACCTGTCG-CTGAG 14077 Query 293174 AGATCTCCCACGATGTCTTGTACACTGCCTTGACATCAGGATGAATGCCAATAACCTTCT 293233 | ||||||||| |||||||||| ||||||||||| | | | ||| | |||| Sbjct 14076 AAATCTCCCACACAGTCTTGTACAGAGCCTTGACATCGGCAGGGATGTTGGGGATGTTCT 14017 Query 293234 GGATAGACCCTCCGTTGGCAATAATCTGGTTCTTCATTGTCTCGGACC-AAGTCCCACGA 293292 ||||||| || | ||||| || |||||||||| | ||||||| ||| |||| | Sbjct 14016 GGATAGAACCGTTCTCAGCAATGATACGGTTCTTCATAGCATCGGACCAAAGACCCATG- 13958 Query 293293 GCAATGAGCTCGCGGACAAGGTAAGAGTTGACAACGGGGAACTCACCAGCGAGAGTGCGA 293352 | | || || || ||| | | ||||||||| ||||||| ||||| || || Sbjct 13957 TCGACAAGATCCTTGAGAAGCCAGGGGTTGACAACCTGGAACTCGCCAGCAAGGACTCGG 13898 Query 293353 CGGCTGTAAATGTTCGAAGTGATGGGTTCGGCTGCCTCAACAGACCCGCAAATCTGAGCA 293412 || ||| ||||| || || ||| ||| ||| || |||||| | Sbjct 13897 CGTTGGTAGATGTTGGAGGTATAGGGCTCGAAGCACTCGTTGTTGCCAAGAATCTGCGAG 13838 Query 293413 GTAGATGCGGTAGGCATAAGAGCAGTCGTCAGAGAGTTCCTCACACCCT---TCTTGACA 293469 ||| || ||||||||| ||||| |||| ||| | | ||| | |||||||| Sbjct 13837 GTACTGGCAGTAGGCATAGGAGCAACGAGCAGACTGTTGCGGATACCGTGAGTCTTGACA 13778 Query 293470 CGCGATTCGAGACCCGCCCAGT-CCAGAGCAGTCTG-AGGTGTAACACCCCAGAGATGAT 293527 | | ||| |||| | ||| || ||| | ||| | ||| ||| | | | Sbjct 13777 TCCTCTCGGAGGGATTCCCACTCCCAAAG--GTCAGAAGGCTTGACATTCCACATGTCAA 13720 Query 293528 ACTGCATGATACCCTTGCTGGCAGGAGACCCCTCAAAGGTGGGATGGGGGCCATGCTCAT 293587 |||| | ||||||| ||||||||| |||| ||||||| | ||| || | ||| | Sbjct 13719 ACTGGAGAATACCCTCAGAGGCAGGAGAGCCCTTGAAGGTGGAGTAGGGACCCTCCTCCT 13660 Query 293588 CAGAGAGCTCGCAAGATGCCTCAACAGCAGCAAAGTAAATGTGCTCGAAGATCTCACGGT 293647 | ||||| ||| | || ||||| ||| ||| ||||||||| | || Sbjct 13659 TGGCGAGCTGTACAGAAGTGGTAAGGGCAGCGTGGTAGATGGTCTCGAAGATTTGCTTGT 13600 Query 293648 TGAGCTTGCGAGCCTGCTCAGAGTCAAACGGCATCTTCAGCTGGAAGAACACATCCTGCA 293707 | |||| ||||||| ||| ||||| ||||| || | ||| |||| | Sbjct 13599 TCAGCTCACGAGCCTCGGGAGACTCAAAGGGCATGCGGAGAGCAAGGAAGGCATCAGCAA 13540 Query 293708 GACCCTGTACACCTACACCAACGGGGCGACGACGCTTGTTGCT 293750 |||| || ||||| | ||||| ||| || ||||| ||||||| Sbjct 13539 GACCTTGAACACCAAGACCAATGGGTCGGTGACGCATGTTGCT 13497 >seq765 Length=31563 Score = 96.9 bits (106), Expect = 7e-15 Identities = 156/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 || |||||||| || ||||| ||||| ||||| || |||| |||||||| || ||| Sbjct 16334 GGCGAGGATCTCTGCAACTGTACCTTCTCTCTCGCCTACGGTGCCAAGATTCTTCTTAAC 16393 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 || | |||| |||||||||| | || || ||||| ||||||||| || | Sbjct 16394 CAGACTCACCTCCGTCTCAAGCGTGGTCAGCGTTACGGTCTTTGCGGTCCCAACGGTTCT 16453 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| ||| || ||||||||||| |||| ||| | | ||| ||||| | ||| Sbjct 16454 GGAAAGTCCACCCTCATGCGCGCCATCAACAACGAGCAGGTCG-AGGGTTTCCCCAAGCA 16512 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565 ||||| | ||| || | || ||||||||| | ||||| Sbjct 16513 GGACGAGGTCAAGACTGTCTTCGTTGAGCACGACTTGGACTC 16554 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027815913713826