Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20langsethiae_20[genbank_20GCA_5F001292635.1_202015-09-16] 1,586 sequences; 37,543,021 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq391 188 1e-42 seq1088 167 4e-36 seq1221 134 3e-26 seq700 122 2e-22 seq765 98.7 2e-15 >seq391 Length=65998 Score = 188 bits (208), Expect = 1e-42 Identities = 178/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| || || | |||| ||| || |||||||| || |||||||| || |||||| Sbjct 44446 CCACCGCGGAGACGGAGGACCAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAG 44505 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| |||||||| || | || || ||||| || ||| Sbjct 44506 AGGGTGCGGCCATCTTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGA 44565 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| |||||||| | |||||| |||||||| || | || || || Sbjct 44566 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTATCAGAAGACTCGACC 44625 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || || |||||||||||||||||||| ||||| Sbjct 44626 TCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAATATTTGCAT 44672 Score = 152 bits (168), Expect = 9e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||||||||| | || | || || || || || || || ||||| || || || Sbjct 44674 CCACCGCGAAGGCGGAGGACGAGATGAAGGGTTGATTCCTTCTGAATGTTGTAGTCAGAC 44733 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||| || || | |||||| |||||||| || | || || ||||| || ||| Sbjct 44734 AGGGTGCGCCCGTCCTCAAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGA 44793 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| |||||||| | |||||| |||||||| || | || || || Sbjct 44794 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTATCAGAAGACTCGACC 44853 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || || |||||||||||||| || || ||||| Sbjct 44854 TCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATTTGCAT 44900 >seq1088 Length=144876 Score = 167 bits (184), Expect = 4e-36 Identities = 176/232 (76%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | |||| ||| || |||||||| || |||||||| || ||| Sbjct 60711 CCACCACGGAGGCGGAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGCTC 60652 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || || || || |||| || ||||| || ||| Sbjct 60651 AGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGA 60592 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | ||||||| || |||||||| | || || || Sbjct 60591 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACC 60532 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATGC 68466 || | |||||| || || ||||| |||||||||||||| |||||||| |||| Sbjct 60531 TCAAGGGTGATCGTCTTCCCCGTAAGGGTCTTGACGAAAATCTGCATGATGC 60480 >seq1221 Length=114529 Score = 134 bits (148), Expect = 3e-26 Identities = 137/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 || |||||||| || |||||||| || | ||||| || | |||||| || ||||| || Sbjct 56450 TTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATC 56391 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 | || || ||||| || || ||||| |||||||| || ||||| | |||||| ||| Sbjct 56390 AATCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 56331 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 |||||||| | || || || || | ||||||||| || ||||| |||||||| ||||| Sbjct 56330 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 56272 >seq700 Length=246488 Score = 122 bits (134), Expect = 2e-22 Identities = 558/866 (64%), Gaps = 33/866 (4%) Strand=Plus/Minus Query 9939 ACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTCGAGG 9998 || || ||||||||||| || | || || |||||| ||||||| |||||| | || Sbjct 28290 ACACCAGCCTTCTGGTAGTCAGCAACACGCTTCTCGAAAAAGTTGGTCTTGCCACCAAGA 28231 Query 9999 GAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACCGAGT 10058 || ||| |||||||||||| |||||||| ||| || ||| || ||||| Sbjct 28230 GAGATGTTCTCCATGAAGTCGAAGGGGTTGGTGGCCTTGTACACCTTCTCGTTGCCGAGG 28171 Query 10059 GCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTTCATG 10118 || || | || ||||| ||||||||||||||||| |||| |||| |||||||||| Sbjct 28170 GCGACGAGCAGACGATCAGCGACGAACTCGATGTACTGCTTCATGAGGTTCGAGTTCATG 28111 Query 10119 CCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGCTTCC 10178 || | || || |||| || || | ||| | || || ||| || || || Sbjct 28110 CCTAGCAGAGCACAAGGGAGAGCCTCAGTGAGGAACTTCTGCTCAATGGTAACGGCATCG 28051 Query 10179 TCGACGATGCTCTTTACCA----CGTCAAGGGACAGCTTGTTCTCGAGCTTCGAATACAG 10234 || |||| || | || | | || || | || ||| | || | || Sbjct 28050 GTGATGATGTCCTGGATCATCTGCTTGCTGGCACGTC----CCTTGAGGTGAGAGTGGAG 27995 Query 10235 GAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAAACC 10294 ||| |||| | ||| || |||||||| || ||||| |||||| || ||| Sbjct 27994 GAGGCAGGCAAAGTCGGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTAGAGAAAGT 27935 Query 10295 CAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGG-CGCAGAACGACCCGGAGA 10353 ||||||||||||||| || || || ||||||||||||| ||| || | ||| || Sbjct 27934 CAGACCGGGCATGAGACCACGCTTCTTGAGCCAGAAAATGGAAGCA-AAGGCACCGCTGA 27876 Query 10354 ACAGAAGACCCTCCAC-GCACACCCAGGCGACGAGGCGCTCTGCGAAGG-AGCGGTCGCG 10411 | | | |||||| || ||| | |||| || || |||| || |||| || | || | Sbjct 27875 AGAAGATACCCTCAACAGCA-GCAAAGGCAACAAGACGCTGGGCAAAGGAAGAGTTCTTG 27817 Query 10412 CGAAAAGTATTTCGA--GGCCCACGCTGCCTTCTTTCCCACGGCAGGGATCGTCTCGATA 10469 | |||| ||||| | |||||||||| | | ||| || || || | Sbjct 27816 TCCTGGATCCATCGAATAGCCCAATCAGCCTTCTTTCGGATGCAAGGAATGGTGTCAACG 27757 Query 10470 GCCTCGAAGAGCTTGTTACGCTCGGTCTCGTCCTCAATAAGAGCATCAAGGAGCAGGGAG 10529 || | |||||| | | | || | |||| || | |||| |||||| ||| Sbjct 27756 GCGTTGAAGAGGTAAGTTCTCTGAGCAGGCTCCTTGATGTAGGTGTCAATGAGCAGAGAG 27697 Query 10530 TATTGCTCGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAA-CATACGTGCC-G 10587 ||| ||| ||||| | |||| | |||| || ||||||| ||| || ||| Sbjct 27696 TATGTTTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAT-CGAGCCTC 27638 Query 10588 AGGGGTCCGTGACTTCCTCG--GCAAAGTTGTTGTTC-AGGTTCTCCATCACCATGCCAT 10644 |||| || ||| ||||| || | | | | | |||||||| | || || |||| Sbjct 27637 AGGGATC--TGA--ACCTCGCCGCTGAATCGCTCAACAAGGTTCTCGTTGACAATACCAT 27582 Query 10645 CGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATC-GTT---C 10700 || | | |||||||| | || ||||| |||||||| |||| || | ||| | Sbjct 27581 CGGAGGCGGCAAAGAAAGCAAGAATGTGGGAGATGAAGTACTGCTCGTCCGCAGTTAGAC 27522 Query 10701 AGTTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCCAGAAA 10760 ||| || |||||| | ||||| | || | || |||||| | |||||||| Sbjct 27521 GGTTGTT----CCAGTCATGGAGATCCTTGGAAAGATCGATCTCCTCGGCTGTCCAGAAG 27466 Query 10761 GTGGCAACGGCCTTCTTGTACATCTG 10786 | || |||||||||||||||| || Sbjct 27465 GAAGCCTCGGCCTTCTTGTACATTTG 27440 >seq765 Length=31563 Score = 98.7 bits (108), Expect = 2e-15 Identities = 437/676 (65%), Gaps = 37/676 (5%) Strand=Plus/Minus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 |||||||||||||||| | || ||| |||| || ||||| || || || |||||| Sbjct 17343 CGCCACTGGATGTACTCGGAAGGAGTCTTGTCGAGATGGTTATCGATGTGAGCGAAAGCG 17284 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGT-CGG 225099 ||||| | ||| || || || ||||| |||| | | ||| | || || Sbjct 17283 TGCTGCTTAATGTAGGCGATACGGATGTTCTCGTGCTGGTAGATCTCACCCTGGGTAGGG 17224 Query 225100 TTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAAT 225159 || | ||| || |||||||| ||||| || |||| |||||| ||||| ||||| ||||| Sbjct 17223 ATGAG-CTCACCAGTGAGGACGTTGATCAGAGTAGACTTGCCAGCACCGTTGGGACCAAT 17165 Query 225160 CACGCCAATCCGGGATGACATTGCAACCTGCGAGTTCACGTTGCTGAAGATCTCAGGGC- 225218 ||| |||| || || || | ||| || | || ||| ||||| |||| Sbjct 17164 AACGGCAATACGAGAGCCCAGAGAGCACTGGAAGGAGATGTCGCT---GATCT-GGGGCT 17109 Query 225219 --CAGTT----TGGTAAGCAAAGGCCA------CGCCACGCAGCTTCATGATGGCACGGT 225266 || | |||| |||| || | |||| || ||||| | Sbjct 17108 TGGAGGTACCGGGGTATTGGAAGGACATATGGGTGGCACGGAG------AATGGCCTTGG 17055 Query 225267 CCTTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGT 225326 |||||| | | |||||| ||||| |||||||||||||| ||| | || | | | Sbjct 17054 CCTTGGTCTTGACACCCTCAAGGAAACCGGGCTCGGGGAAGCTGAACTCGATCTCAGACT 16995 Query 225327 CCTTCAGGTCGTAGTAAGATGCAGC-CTCGGGTCGCTTTGCCACGAAAGCAGACAGGTTT 225385 | || |||||||| || || |||| || || |||||||||| |||||| Sbjct 16994 CACCAAGCTCGTAGTAGGACTTGGCGGAGGGGTTGC-GGGCGACGAAAGCAGCCAGGTTA 16936 Query 225386 CCGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACACTGC 225444 || || | ||||||||| || |||||| ||||| || ||| | ||| || Sbjct 16935 CCCTTGTAACGCTTGAGCTTGA--ATC-GCTCGTAGTGAACGATGTGCTG-GCAGACGTT 16880 Query 225445 GTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACG-ACACGTTCGTCAGGCCCTTGA 225503 ||| ||||| ||||||||||| || || ||||| || | || | || | ||||| Sbjct 16879 GTCGAGGAAACCAGAGTCGTGAGAGACGATGATAGAAGTGCAAG--CG--GAGTTCTTGA 16824 Query 225504 GGTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAA 225563 ||| | |||||| ||||| | || |||| ||||| ||||| ||||| || | Sbjct 16823 GGTACTCCTCGAGCCACTTAACGTTCTTCACATCCAAATGGTTGGTAGGCTCGTCGAGCA 16764 Query 225564 GCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCC 225623 ||| || || | | | || || || || | || |||||||| ||||| || | Sbjct 16763 ACAGAATATCGGGAGCCTCGAAGACAGCACGGCACAAAGCAAGCTTCATCTTCCAACCAC 16704 Query 225624 CGGACAGGGAGCCGAT 225639 | || |||| || ||| Sbjct 16703 CAGAGAGGGCGCTGAT 16688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921604128835920