Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20langsethiae_20[genbank_20GCA_5F001292635.1_202015-09-16]
1,586 sequences; 37,543,021 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq1088 118 1e-21
seq700 104 2e-17
seq391 82.4 8e-11
>seq1088
Length=144876
Score = 118 bits (130), Expect = 1e-21
Identities = 143/195 (73%), Gaps = 0/195 (0%)
Strand=Plus/Minus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| || |||||||||||||||| || || |||||||| || ||||| | |
Sbjct 60678 GACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCA 60619
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540
|||| || ||||| |||||||| || || || || ||||| ||| || || |
Sbjct 60618 AAGATAAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACG 60559
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
| || | |||||||| ||||||||||| | || | ||| || || || || || ||
Sbjct 60558 TTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTAAGGGTCTTG 60499
Query 138601 ACAAAAATCTGCATG 138615
|| ||||||||||||
Sbjct 60498 ACGAAAATCTGCATG 60484
>seq700
Length=246488
Score = 104 bits (114), Expect = 2e-17
Identities = 330/508 (65%), Gaps = 19/508 (4%)
Strand=Plus/Plus
Query 52329 CCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCCACG 52388
|| ||| | || || |||||| | ||||| || |||||| || | | | | | |
Sbjct 27770 CCTTGCATCCGAAAGAAGGCTGATTGGGCTATTCGATGGATCCAGGACAAGAACTCTTCC 27829
Query 52389 CTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTT 52448
| ||| |||| | || ||||| || || ||||| | || || ||| ||||
Sbjct 27830 TTTGCCCAGCGTCTTGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGCGGTGCCTTT 27889
Query 52449 GCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAG 52508
|| |||| || | | || | | || | |||||||| ||||| ||| ||||||
Sbjct 27890 GCTTCCATTTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTGACTTTCTCTAACGAG 27949
Query 52509 TTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCT---ACT---ACAAG 52562
| || || || ||||| || || ||||| |||||||| |||||| ||| ||
Sbjct 27950 CTCATCTCTCGTGACGAGGGTCTTCACACCGACTTTGCCTGCCTCCTCCACTCTCACCTC 28009
Query 52563 ACGCG-CGTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGT 52621
| | | |||| | | || | | | ||||| | ||| ||| || || ||
Sbjct 28010 AAGGGACGTGCCAGCAA----------GCAGATGATCCAGGACATCATCACCGATGCCGT 28059
Query 52622 GGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGC 52681
| || || || |||| | || | || || || | ||||| ||||||||| |
Sbjct 28060 TACCATTGAGCAGAAGTTCCTCACTGAGGCTCTCCCTTGTGCTCTGCTAGGCATGAACTC 28119
Query 52682 GCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCA 52741
| | |||| ||||||||||||| || || ||||||||| | || ||||| ||
Sbjct 28120 GAACCTCATGAAGCAGTACATCGAGTTCGTCGCTGATCGTCTGCTCGTCGCCCTCGG-CA 28178
Query 52742 GCCA-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGG 52800
| | ||| | ||| || ||| || || || || ||| | ||||| || |||| |
Sbjct 28179 ACGAGAAGGTGTACAAGGCCACCAACCCCTTCGACTTCATGGAGAACATCTCTCTTGGTG 28238
Query 52801 GCAAGACCAACTTTTTCGAGAAGCGAGT 52828
||||||||||||||||||||||||| ||
Sbjct 28239 GCAAGACCAACTTTTTCGAGAAGCGTGT 28266
>seq391
Length=65998
Score = 82.4 bits (90), Expect = 8e-11
Identities = 145/208 (70%), Gaps = 4/208 (2%)
Strand=Plus/Plus
Query 138411 ATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTG 138470
||| | | |||| ||||| |||||||||||||| || || ||| |||||| || ||
Sbjct 44697 ATGAAGGGTTGATTCCTTCTGAATGTTGTAGTCAGACAGGGTGCGCCCGTCCTCAAGCTG 44756
Query 138471 TTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTT 138530
|| |||| | || | ||||| ||||| ||||| || || || ||||| ||| | |
Sbjct 44757 CTTGCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTC-CTGAATCT 44815
Query 138531 TTG--TTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCA 138588
| | || |||| || | ||| || | ||||| ||||| | || | || || ||
Sbjct 44816 TGGACTTGACATTG-TCGATGGTATCAGAAGACTCGACCTCAAGGGTGATGGTCTTGCCG 44874
Query 138589 GTCAGAGTTTTTACAAAAATCTGCATGG 138616
|| || || || ||||| || |||||||
Sbjct 44875 GTGAGGGTCTTGACAAAGATTTGCATGG 44902
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496252561597920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |