Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20langsethiae_20[genbank_20GCA_5F001292635.1_202015-09-16] 1,586 sequences; 37,543,021 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1088 118 1e-21 seq700 104 2e-17 seq391 82.4 8e-11 >seq1088 Length=144876 Score = 118 bits (130), Expect = 1e-21 Identities = 143/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||||||| || || |||||||| || ||||| | | Sbjct 60678 GACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCA 60619 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| |||||||| || || || || ||||| ||| || || | Sbjct 60618 AAGATAAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACG 60559 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||||| ||||||||||| | || | ||| || || || || || || Sbjct 60558 TTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTAAGGGTCTTG 60499 Query 138601 ACAAAAATCTGCATG 138615 || |||||||||||| Sbjct 60498 ACGAAAATCTGCATG 60484 >seq700 Length=246488 Score = 104 bits (114), Expect = 2e-17 Identities = 330/508 (65%), Gaps = 19/508 (4%) Strand=Plus/Plus Query 52329 CCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCCACG 52388 || ||| | || || |||||| | ||||| || |||||| || | | | | | | Sbjct 27770 CCTTGCATCCGAAAGAAGGCTGATTGGGCTATTCGATGGATCCAGGACAAGAACTCTTCC 27829 Query 52389 CTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTT 52448 | ||| |||| | || ||||| || || ||||| | || || ||| |||| Sbjct 27830 TTTGCCCAGCGTCTTGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGCGGTGCCTTT 27889 Query 52449 GCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAG 52508 || |||| || | | || | | || | |||||||| ||||| ||| |||||| Sbjct 27890 GCTTCCATTTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTGACTTTCTCTAACGAG 27949 Query 52509 TTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCT---ACT---ACAAG 52562 | || || || ||||| || || ||||| |||||||| |||||| ||| || Sbjct 27950 CTCATCTCTCGTGACGAGGGTCTTCACACCGACTTTGCCTGCCTCCTCCACTCTCACCTC 28009 Query 52563 ACGCG-CGTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGT 52621 | | | |||| | | || | | | ||||| | ||| ||| || || || Sbjct 28010 AAGGGACGTGCCAGCAA----------GCAGATGATCCAGGACATCATCACCGATGCCGT 28059 Query 52622 GGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGC 52681 | || || || |||| | || | || || || | ||||| ||||||||| | Sbjct 28060 TACCATTGAGCAGAAGTTCCTCACTGAGGCTCTCCCTTGTGCTCTGCTAGGCATGAACTC 28119 Query 52682 GCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCA 52741 | | |||| ||||||||||||| || || ||||||||| | || ||||| || Sbjct 28120 GAACCTCATGAAGCAGTACATCGAGTTCGTCGCTGATCGTCTGCTCGTCGCCCTCGG-CA 28178 Query 52742 GCCA-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGG 52800 | | ||| | ||| || ||| || || || || ||| | ||||| || |||| | Sbjct 28179 ACGAGAAGGTGTACAAGGCCACCAACCCCTTCGACTTCATGGAGAACATCTCTCTTGGTG 28238 Query 52801 GCAAGACCAACTTTTTCGAGAAGCGAGT 52828 ||||||||||||||||||||||||| || Sbjct 28239 GCAAGACCAACTTTTTCGAGAAGCGTGT 28266 >seq391 Length=65998 Score = 82.4 bits (90), Expect = 8e-11 Identities = 145/208 (70%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 138411 ATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTG 138470 ||| | | |||| ||||| |||||||||||||| || || ||| |||||| || || Sbjct 44697 ATGAAGGGTTGATTCCTTCTGAATGTTGTAGTCAGACAGGGTGCGCCCGTCCTCAAGCTG 44756 Query 138471 TTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTT 138530 || |||| | || | ||||| ||||| ||||| || || || ||||| ||| | | Sbjct 44757 CTTGCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTC-CTGAATCT 44815 Query 138531 TTG--TTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCA 138588 | | || |||| || | ||| || | ||||| ||||| | || | || || || Sbjct 44816 TGGACTTGACATTG-TCGATGGTATCAGAAGACTCGACCTCAAGGGTGATGGTCTTGCCG 44874 Query 138589 GTCAGAGTTTTTACAAAAATCTGCATGG 138616 || || || || ||||| || ||||||| Sbjct 44875 GTGAGGGTCTTGACAAAGATTTGCATGG 44902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496252561597920