Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20langsethiae_20[genbank_20GCA_5F001292635.1_202015-09-16] 1,586 sequences; 37,543,021 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1088 118 1e-21 seq391 116 4e-21 seq1221 113 4e-20 >seq1088 Length=144876 Score = 118 bits (130), Expect = 1e-21 Identities = 147/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| |||| || ||||| ||| || ||||| || ||| Sbjct 60681 GTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTACCA 60622 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | ||||||||| || || || ||||||||||||||| ||| || |||| Sbjct 60621 GCAAAGATAAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTG 60562 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | ||||| | | |||||| | | ||| || || | ||| | ||| || || || || || Sbjct 60561 ACGTTGT-CAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTAAGGGT 60503 Query 127096 TTTTACAAAAATCTGCATG 127114 || || |||||||||||| Sbjct 60502 CTTGACGAAAATCTGCATG 60484 >seq391 Length=65998 Score = 116 bits (128), Expect = 4e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | || | ||| | || || || || ||||| ||||| || | Sbjct 44674 CCACCGCGAAGGCGGAGGACGAGATGAAGGGTTGATTCCTTCTGAATGTTGTAGTCAGAC 44733 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || ||||| || || ||| | |||||||||||||| || ||||| Sbjct 44734 AGGGTGCGCCCGTCCTCAAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGA 44793 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| || || ||||| | |||| ||| || | | |||||| Sbjct 44794 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTATCAGAAGACTCGACC 44853 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 127115 || | ||| | || |||||||| || || || ||||| || ||||||| Sbjct 44854 TCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATTTGCATGG 44902 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | |||| || | || ||||| || || || ||||| ||| Sbjct 44446 CCACCGCGGAGACGGAGGACCAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAG 44505 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| || || ||| | |||||||||||||| || ||||| Sbjct 44506 AGGGTGCGGCCATCTTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGA 44565 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| || || ||||| | |||| ||| || | | |||||| Sbjct 44566 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTATCAGAAGACTCGACC 44625 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || |||||||| || || || || || || ||||| Sbjct 44626 TCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAATATTTGCAT 44672 >seq1221 Length=114529 Score = 113 bits (124), Expect = 4e-20 Identities = 121/159 (76%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 126958 ATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTT 127017 ||| || ||||| || |||||| |||||||||||||||| || || || ||||||||||| Sbjct 56418 ATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCCGGGGGGATGCCCTCCTT 56359 Query 127018 GTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 |||| ||| || ||||| | |||| |||||||| |||||| |||| ||| | Sbjct 56358 GTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGAT 56299 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGC 127116 || ||||| ||||| || || || ||| ||| ||||| Sbjct 56298 GGTCTTGCCCGTCAGGGTCTTCACGAAA--CTGGATGGC 56262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475491373196640