Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20langsethiae_20[genbank_20GCA_5F001292635.1_202015-09-16] 1,586 sequences; 37,543,021 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq391 104 2e-17 seq1088 93.3 4e-14 >seq391 Length=65998 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || |||||||| | | || || || || || || ||||| ||||| || || ||| | Sbjct 44446 CCACCGCGGAGACGGAGGACCAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAG 44505 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| ||| || | || || || ||| | |||||||| |||||||| || ||| Sbjct 44506 AGGGTGCGGCCATCTTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGA 44565 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 ||||| || || || ||||| || |||| || | ||| || ||||||||||| Sbjct 44566 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTATCAGAAGACTCGACC 44625 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || | || |||||||| || || || || || |||||||| Sbjct 44626 TCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAATATTTGCAT 44672 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || ||||| || | | || ||||| || ||||||||||| || || || || || Sbjct 44671 ATACCACCGCGAAGGCGGAGGACGAGATGAAGGGTTGATTCCTTCTGAATGTTGTAGTCA 44730 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| || || | || || || ||| | |||||||| |||||||| || Sbjct 44731 GACAGGGTGCGCCCGTCCTCAAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCAGGA 44790 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 |||||||| || || || ||||| || |||| || | ||| || ||||||||| Sbjct 44791 GGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTATCAGAAGACTCG 44850 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | || |||||||| || || || ||||| |||||||| Sbjct 44851 ACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATTTGCAT 44900 >seq1088 Length=144876 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | | || || || || || || ||||| ||||| || || ||||| Sbjct 60711 CCACCACGGAGGCGGAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGCTC 60652 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| ||| || | || || || || | || | ||| ||||||||||| ||| Sbjct 60651 AGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGA 60592 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 ||||| || || || || || || |||| || | || | ||||||||||||||| || Sbjct 60591 ATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTGTCAATGGTGTCGGAAGACTCCAC 60533 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || | ||| || || || || || || || ||||| ||||| Sbjct 60532 CTCAAGGGTGATCGTCTTCCCCGTAAGGGTCTTGACGAAAATCTGCAT 60485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451994239036560