Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20langsethiae_20[genbank_20GCA_5F001292635.1_202015-09-16]
1,586 sequences; 37,543,021 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq391 104 2e-17
seq1088 93.3 4e-14
>seq391
Length=65998
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173
|| |||||||| | | || || || || || || ||||| ||||| || || ||| |
Sbjct 44446 CCACCGCGGAGACGGAGGACCAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAG 44505
Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233
| ||| ||| || | || || || ||| | |||||||| |||||||| || |||
Sbjct 44506 AGGGTGCGGCCATCTTCGAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGA 44565
Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293
||||| || || || ||||| || |||| || | ||| || |||||||||||
Sbjct 44566 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTATCAGAAGACTCGACC 44625
Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| || || | || |||||||| || || || || || ||||||||
Sbjct 44626 TCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAATATTTGCAT 44672
Score = 100 bits (110), Expect = 3e-16
Identities = 160/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || ||||| || | | || ||||| || ||||||||||| || || || || ||
Sbjct 44671 ATACCACCGCGAAGGCGGAGGACGAGATGAAGGGTTGATTCCTTCTGAATGTTGTAGTCA 44730
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| ||| || || | || || || ||| | |||||||| |||||||| ||
Sbjct 44731 GACAGGGTGCGCCCGTCCTCAAGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCAGGA 44790
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
|||||||| || || || ||||| || |||| || | ||| || |||||||||
Sbjct 44791 GGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTATCAGAAGACTCG 44850
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| || || || | || |||||||| || || || ||||| ||||||||
Sbjct 44851 ACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATTTGCAT 44900
>seq1088
Length=144876
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173
|| || ||||| | | || || || || || || ||||| ||||| || || |||||
Sbjct 60711 CCACCACGGAGGCGGAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGCTC 60652
Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233
| ||| ||| || | || || || || | || | ||| ||||||||||| |||
Sbjct 60651 AGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGA 60592
Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292
||||| || || || || || || |||| || | || | ||||||||||||||| ||
Sbjct 60591 ATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTGTCAATGGTGTCGGAAGACTCCAC 60533
Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| || || | ||| || || || || || || || ||||| |||||
Sbjct 60532 CTCAAGGGTGATCGTCTTCCCCGTAAGGGTCTTGACGAAAATCTGCAT 60485
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 451994239036560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |