Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20langsethiae_20[genbank_20GCA_5F001292635.1_202015-09-16]
1,586 sequences; 37,543,021 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq700 215 5e-51
seq391 123 2e-23
seq1088 113 5e-20
seq1221 111 2e-19
>seq700
Length=246488
Score = 215 bits (238), Expect = 5e-51
Identities = 555/828 (67%), Gaps = 23/828 (3%)
Strand=Plus/Minus
Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAG-GAAATGAGCGTCATAAAATCCAAGGGGTT 132683
||||| ||||| || || || || ||||| || ||| | ||| || || ||||||||
Sbjct 28260 TTCTCGAAAAAGTTGGTCTTGCCA-CCAAGAGAGATGTTCTCCATGAAGTCGAAGGGGTT 28202
Query 132684 GGCTGTGTTGTAGTGCTT---GGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAA 132740
|| | ||||| ||| | |||||| || |||||||||| | || || |||||
Sbjct 28201 GGTGGCCTTGTACACCTTCTCGTTGCCGA---GGGCGACGAGCAGACGATCAGCGACGAA 28145
Query 132741 CTCGATGTATTGCGACATG-GTTTCGCAATTAAGTCCCAGCAGACGCACC-GGCAGCGCT 132798
||||||||| ||| |||| | |||| | || | || |||||| |||| || || ||
Sbjct 28144 CTCGATGTACTGCTTCATGAGGTTCG-AGTTCATGCCTAGCAGA-GCACAAGGGAGAGCC 28087
Query 132799 TCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCC 132858
|| ||||| || ||||| |||| || || ||||||| ||| ||| | | |
Sbjct 28086 TCAGTGAGGAACTTCTGCTCAATGGTAACGGCATCGGTGATGATGTCCTGGATCATCTGC 28027
Query 132859 GCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCC 132918
||| | ||| | | || | | | ||| ||||||||| || | |||
Sbjct 28026 TTGCTGGCACGTCCCTTGAGGTGAGAGTGGAGGAGGCAGGCAAAGTCGGTGTGAAGACCC 27967
Query 132919 TCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTG 132978
||||| | || ||||| ||||| |||||||| ||||||||||| || || || |||
Sbjct 27966 TCGTCACGAGAGATGAGCTCGTTAGAGAAAGTCAGACCGGGCATGAGACCACGCTTCTTG 27907
Query 132979 AGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCC 133038
||||| || |||| || || || ||||||| ||||| || || || || ||
Sbjct 27906 AGCCAGAAAATGGAAGCAAAGGCACCGCTGAAGAAGATACCCTCAACAGCAGCAAAGGCA 27847
Query 133039 ACCAGGCGCTCGCCGAACG-TGGCTTCTT-TGCTGGCGATCCAGCGCAGCGCCCATTCGG 133096
|| || |||| | | || | | ||||| | ||| |||||| || | ||||| || |
Sbjct 27846 ACAAGACGCTGGGCAAAGGAAGAGTTCTTGTCCTG--GATCCATCGAATAGCCCAATCAG 27789
Query 133097 CCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCG 133156
|||| | | || ||| || || || || | |||||| | | | | | ||||||
Sbjct 27788 CCTTCTTTCGGATGCAAGGAATGGTGTCAACGGCGTTGA--AGAGGTAAGTTCTCTGAGC 27731
Query 133157 AGGAAC--GCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCAT 133214
||| | | ||||||||| ||||| || || |||| ||||| | |||||||||
Sbjct 27730 AGGCTCCTTGATGTAGGTGTCAATGAGCAGAGAGTATGTTTCGGAGTGGATGTTCTCCAT 27671
Query 133215 GGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACG 133274
||| || || ||||| ||||| || ||||| | ||| || || ||| ||
Sbjct 27670 CATGATCTGGAAACCGTAGAAGCATCGAGCCTCAGGGATCTGAACCTCGCCGCTGAATCG 27611
Query 133275 CTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTT 133334
||| || || || |||||||| || || ||| |||||| || || || || | |||
Sbjct 27610 CTCAACAAGGTTCTCGTTGACAATACCATCGGAGGCGGCAAAGAAAGCAAGAATGTGGGA 27551
Query 133335 GATGAAATGGCGCTCGT-TGTCGTTCAA--GCGCTCCCAGTCGCGCGTGTCCTTGGACAG 133391
|||||| | |||||| | ||| | | | |||||| | |||||||| ||
Sbjct 27550 GATGAAGTACTGCTCGTCCGCAGTTAGACGGTTGTTCCAGTCATGGAGATCCTTGGAAAG 27491
Query 133392 GTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439
|| | ||||||| | ||||| || || |||||||| || ||||||||
Sbjct 27490 ATCGATCTCCTCGGCTGTCCAGAAGGAAGCCTCGGCCTTCTTGTACAT 27443
>seq391
Length=65998
Score = 123 bits (136), Expect = 2e-23
Identities = 157/216 (73%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||||||||| || || ||||| ||||| ||||||||| | || |||||| | |
Sbjct 44672 ATGCAAATATTCGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTCGAGTCTTCT 44613
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|| | | | | | | || || || | ||||| ||||| ||||| | |||||
Sbjct 44612 GATACCATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAG 44553
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| | |||| ||| ||||| ||||| || || | ||||||||| ||||||||||
Sbjct 44552 CAGCGATTGATTTTCGCCGGCAAGCAGCTCGAAGATGGCCGCACCCTCTCCGACTACAAC 44493
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
||||| ||||| | || || || |||| || |||
Sbjct 44492 ATCCAGAAGGAGTCCACTCTTCACCTGGTCCTCCGT 44457
Score = 113 bits (124), Expect = 5e-20
Identities = 154/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| || || || || ||||| ||||| ||||||||| | || |||||| | |
Sbjct 44900 ATGCAAATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTCGAGTCTTCT 44841
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|| | | | | | | || || || | ||||| ||||| ||||| | |||||
Sbjct 44840 GATACCATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAG 44781
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| | |||| ||| ||||| ||||| || |||| ||||||||| |||||||||
Sbjct 44780 CAGCGATTGATTTTCGCCGGCAAGCAGCTTGAGGACGGGCGCACCCTGTCTGACTACAAC 44721
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
|| || |||||| | || || ||| | || || ||
Sbjct 44720 ATTCAGAAGGAATCAACCCTTCATCTCGTCCTCCG 44686
>seq1088
Length=144876
Score = 113 bits (124), Expect = 5e-20
Identities = 156/216 (72%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || || ||||| || || |||||| | || || ||| | ||
Sbjct 60485 ATGCAGATTTTCGTCAAGACCCTTACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCC 60544
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | | |||| | || || |||| ||||| ||||| |||||| | |||||
Sbjct 60545 GACACCATTGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCA 60603
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| || || | || || || ||||| || || | |||||||| | |||||||||
Sbjct 60604 GCAGCGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTACAA 60663
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
|||||| ||||| | || || || |||| || ||
Sbjct 60664 CATCCAGAAGGAGTCCACTCTCCACCTGGTCCTCCG 60699
>seq1221
Length=114529
Score = 111 bits (122), Expect = 2e-19
Identities = 133/181 (73%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312
||||| || || || |||||||| ||||||||| |||| |||||| || | |||| | |
Sbjct 56272 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATC 56331
Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372
| | | || || |||| ||||| ||||| || ||| | ||||| ||||| |
Sbjct 56332 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGATTG 56391
Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432
|| | ||| ||||| ||||| || || | || |||||| ||||||||||||||| |||
Sbjct 56392 ATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGAACCCTCTCCGACTACAACATCCAGAAG 56451
Query 38433 G 38433
|
Sbjct 56452 G 56452
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500162884074240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |