Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20langsethiae_20[genbank_20GCA_5F001292635.1_202015-09-16] 1,586 sequences; 37,543,021 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq700 215 5e-51 seq391 123 2e-23 seq1088 113 5e-20 seq1221 111 2e-19 >seq700 Length=246488 Score = 215 bits (238), Expect = 5e-51 Identities = 555/828 (67%), Gaps = 23/828 (3%) Strand=Plus/Minus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAG-GAAATGAGCGTCATAAAATCCAAGGGGTT 132683 ||||| ||||| || || || || ||||| || ||| | ||| || || |||||||| Sbjct 28260 TTCTCGAAAAAGTTGGTCTTGCCA-CCAAGAGAGATGTTCTCCATGAAGTCGAAGGGGTT 28202 Query 132684 GGCTGTGTTGTAGTGCTT---GGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAA 132740 || | ||||| ||| | |||||| || |||||||||| | || || ||||| Sbjct 28201 GGTGGCCTTGTACACCTTCTCGTTGCCGA---GGGCGACGAGCAGACGATCAGCGACGAA 28145 Query 132741 CTCGATGTATTGCGACATG-GTTTCGCAATTAAGTCCCAGCAGACGCACC-GGCAGCGCT 132798 ||||||||| ||| |||| | |||| | || | || |||||| |||| || || || Sbjct 28144 CTCGATGTACTGCTTCATGAGGTTCG-AGTTCATGCCTAGCAGA-GCACAAGGGAGAGCC 28087 Query 132799 TCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCC 132858 || ||||| || ||||| |||| || || ||||||| ||| ||| | | | Sbjct 28086 TCAGTGAGGAACTTCTGCTCAATGGTAACGGCATCGGTGATGATGTCCTGGATCATCTGC 28027 Query 132859 GCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCC 132918 ||| | ||| | | || | | | ||| ||||||||| || | ||| Sbjct 28026 TTGCTGGCACGTCCCTTGAGGTGAGAGTGGAGGAGGCAGGCAAAGTCGGTGTGAAGACCC 27967 Query 132919 TCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTG 132978 ||||| | || ||||| ||||| |||||||| ||||||||||| || || || ||| Sbjct 27966 TCGTCACGAGAGATGAGCTCGTTAGAGAAAGTCAGACCGGGCATGAGACCACGCTTCTTG 27907 Query 132979 AGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCC 133038 ||||| || |||| || || || ||||||| ||||| || || || || || Sbjct 27906 AGCCAGAAAATGGAAGCAAAGGCACCGCTGAAGAAGATACCCTCAACAGCAGCAAAGGCA 27847 Query 133039 ACCAGGCGCTCGCCGAACG-TGGCTTCTT-TGCTGGCGATCCAGCGCAGCGCCCATTCGG 133096 || || |||| | | || | | ||||| | ||| |||||| || | ||||| || | Sbjct 27846 ACAAGACGCTGGGCAAAGGAAGAGTTCTTGTCCTG--GATCCATCGAATAGCCCAATCAG 27789 Query 133097 CCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCG 133156 |||| | | || ||| || || || || | |||||| | | | | | |||||| Sbjct 27788 CCTTCTTTCGGATGCAAGGAATGGTGTCAACGGCGTTGA--AGAGGTAAGTTCTCTGAGC 27731 Query 133157 AGGAAC--GCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCAT 133214 ||| | | ||||||||| ||||| || || |||| ||||| | ||||||||| Sbjct 27730 AGGCTCCTTGATGTAGGTGTCAATGAGCAGAGAGTATGTTTCGGAGTGGATGTTCTCCAT 27671 Query 133215 GGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACG 133274 ||| || || ||||| ||||| || ||||| | ||| || || ||| || Sbjct 27670 CATGATCTGGAAACCGTAGAAGCATCGAGCCTCAGGGATCTGAACCTCGCCGCTGAATCG 27611 Query 133275 CTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTT 133334 ||| || || || |||||||| || || ||| |||||| || || || || | ||| Sbjct 27610 CTCAACAAGGTTCTCGTTGACAATACCATCGGAGGCGGCAAAGAAAGCAAGAATGTGGGA 27551 Query 133335 GATGAAATGGCGCTCGT-TGTCGTTCAA--GCGCTCCCAGTCGCGCGTGTCCTTGGACAG 133391 |||||| | |||||| | ||| | | | |||||| | |||||||| || Sbjct 27550 GATGAAGTACTGCTCGTCCGCAGTTAGACGGTTGTTCCAGTCATGGAGATCCTTGGAAAG 27491 Query 133392 GTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 || | ||||||| | ||||| || || |||||||| || |||||||| Sbjct 27490 ATCGATCTCCTCGGCTGTCCAGAAGGAAGCCTCGGCCTTCTTGTACAT 27443 >seq391 Length=65998 Score = 123 bits (136), Expect = 2e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||||||||| || || ||||| ||||| ||||||||| | || |||||| | | Sbjct 44672 ATGCAAATATTCGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTCGAGTCTTCT 44613 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | || || || | ||||| ||||| ||||| | ||||| Sbjct 44612 GATACCATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAG 44553 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | |||| ||| ||||| ||||| || || | ||||||||| |||||||||| Sbjct 44552 CAGCGATTGATTTTCGCCGGCAAGCAGCTCGAAGATGGCCGCACCCTCTCCGACTACAAC 44493 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| ||||| | || || || |||| || ||| Sbjct 44492 ATCCAGAAGGAGTCCACTCTTCACCTGGTCCTCCGT 44457 Score = 113 bits (124), Expect = 5e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || ||||| ||||| ||||||||| | || |||||| | | Sbjct 44900 ATGCAAATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTCGAGTCTTCT 44841 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | || || || | ||||| ||||| ||||| | ||||| Sbjct 44840 GATACCATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAG 44781 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | |||| ||| ||||| ||||| || |||| ||||||||| ||||||||| Sbjct 44780 CAGCGATTGATTTTCGCCGGCAAGCAGCTTGAGGACGGGCGCACCCTGTCTGACTACAAC 44721 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 || || |||||| | || || ||| | || || || Sbjct 44720 ATTCAGAAGGAATCAACCCTTCATCTCGTCCTCCG 44686 >seq1088 Length=144876 Score = 113 bits (124), Expect = 5e-20 Identities = 156/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || ||||| || || |||||| | || || ||| | || Sbjct 60485 ATGCAGATTTTCGTCAAGACCCTTACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCC 60544 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || || |||| ||||| ||||| |||||| | ||||| Sbjct 60545 GACACCATTGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCA 60603 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | || || || ||||| || || | |||||||| | ||||||||| Sbjct 60604 GCAGCGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTACAA 60663 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| ||||| | || || || |||| || || Sbjct 60664 CATCCAGAAGGAGTCCACTCTCCACCTGGTCCTCCG 60699 >seq1221 Length=114529 Score = 111 bits (122), Expect = 2e-19 Identities = 133/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || |||||||| ||||||||| |||| |||||| || | |||| | | Sbjct 56272 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATC 56331 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || || |||| ||||| ||||| || ||| | ||||| ||||| | Sbjct 56332 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGATTG 56391 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | ||| ||||| ||||| || || | || |||||| ||||||||||||||| ||| Sbjct 56392 ATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGAACCCTCTCCGACTACAACATCCAGAAG 56451 Query 38433 G 38433 | Sbjct 56452 G 56452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500162884074240