Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20langsethiae_20[genbank_20GCA_5F001292635.1_202015-09-16] 1,586 sequences; 37,543,021 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq2 206 3e-48 seq147 158 2e-33 seq839 102 1e-16 seq1366 91.5 2e-13 seq1310 84.2 3e-11 >seq2 Length=329948 Score = 206 bits (228), Expect = 3e-48 Identities = 425/629 (68%), Gaps = 6/629 (1%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || |||||||||||||| || || || || || | || || || |||||||| Sbjct 34305 TCGAAGTCCTCACCACCCAAGTGAGTGTCACCGGCAGTGGACTTAACCTCGAAGATACCC 34246 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | |||||| | | | || ||||| || ||||||||||| || || || || || || Sbjct 34245 TCCTCAATGGTAAGGAGAGAGACATCGAAGGTACCACCACCAAGATCGAAGATCAGGACA 34186 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || ||| | || ||||| ||||||||||| || || || || || || || || Sbjct 34185 TTGCGCTCGCCCTCGACCTTCTTGTCGAGACCGTAGGCAATGGCGGCAGCGGTAGGCTCG 34126 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || || || || ||| ||| || || || || | ||||| || || || || || Sbjct 34125 TTGATGATTCGGAGAACGTTGAGACCGGCGATGAGACCGGCATCCTTGGTAGCCTGACGC 34066 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || || ||||| |||||||| ||||| || || || |||| |||| ||| ||||| Sbjct 34065 TGAGAGTCGTTGAAGTAGGCAGGGACGGTGACAACGGCGTTGTTGACAGTCTCGCCGAGG 34006 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816 || || || || | || ||| ||||| || | ||| | || ||||| || | | Sbjct 34005 TAAGACTCAGCAGTCTCACGCATCTTGGTGAGGATCATGGCGGAGATCTCCTCGGGAGTG 33946 Query 7817 AACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGG 7876 || ||| | ||||| || || ||||| || || |||| || |||| | | | Sbjct 33945 AAGGTCTTCTTCTCACCCTTGAACTCAACCTCGATGTTGGGCTT-GCCGC--CCTTGTCG 33889 Query 7877 ATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTT 7936 | | | | | | | ||||| ||| | ||||||| || | |||||| | Sbjct 33888 ACGATTGTGAAGGGGAAGTGCTTCATGTCGGCCTGGACCTCAGCATCGGCAAACTTGCGA 33829 Query 7937 CCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTC 7996 ||||| | ||||| || || || |||||||| | |||||||||||| |||||||| Sbjct 33828 CCGATCAATCGCTTGGCGTCGAAGACTGTGTTCTGGGGGTTCATGGCGACCTGGTTCTTG 33769 Query 7997 GCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTT 8056 || || || || || ||||| || | || || || ||||| | || ||||| ||| Sbjct 33768 GCGGCATCACCAATCAGACGCTC---GGTGTCGGTGAAACCGACGAATGAGGGGGTAGTT 33712 Query 8057 CGATTCCCTTGGTCGTTCGCAATAATTTC 8085 || || || |||||||| || || || || Sbjct 33711 CGGTTACCCTGGTCGTTGGCGATGATATC 33683 Score = 138 bits (152), Expect = 1e-27 Identities = 527/829 (64%), Gaps = 19/829 (2%) Strand=Plus/Minus Query 6569 TCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGAT 6628 || || || || || ||||| || ||||| | | ||| ||||| || || || || Sbjct 35311 TCGTCCTCCTCCTTGTACTTCTCAGCATCGTTAAGCATGCGCTCAATCTCCTCCTTGGAC 35252 Query 6629 AATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCA 6688 | | ||||| || || || || |||||| | ||| || || | |||| || | Sbjct 35251 AGGCGGCCCTTGTCGTTGGTGATGACAATCTTGTTGGACTTGCCGGTACCCTTCTCGACG 35192 Query 6689 GCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTA 6748 || || |||| ||||| || ||||||| |||||| | || | ||| || || | Sbjct 35191 GCGGAGACGTTCATGATACCGTTGGCATCAAGATCGAAGGTGACCTCAATCTGGGGGACA 35132 Query 6749 CCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTC 6808 || | || || | || ||||| || | || || | || | | |||| ||| | Sbjct 35131 CCACGGGGAGCAGGGGGGATACCAGTGAGCTCGAACTTGCCCATAAGGTTGTTGTCCTTG 35072 Query 6809 GCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCC 6868 | || || ||||| || ||||| | || || |||| || || || Sbjct 35071 GTGCGCTGGCGCTCACCCTCGTAGACCTGGATAAGGACACCAGGCTGGTTGTCGGAGAAG 35012 Query 6869 GTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTC 6928 || ||||||| | ||||| | || || || || |||| || || | | |||| Sbjct 35011 GTAGAGAAGACCTCAGACTTCTTGGTGGGGATGGTGGTGTTTCGGGGGATGAGCTTGGTC 34952 Query 6929 ATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGG 6988 || || ||||| || |||| || ||||| ||||| | ||||||| ||| | | Sbjct 34951 ATCATGCCACCAGCGGTCTCGATACCGAGAGAGAGAGGGGCGACGTCCAGGAGGAGGA-- 34894 Query 6989 TCTTGAACAGATTCGTTCCCTT-----------CACCCGTTAAGATGGCGGCTTGGACCG 7037 ||| | || || |||| |||| | | ||||| || ||||| | Sbjct 34893 TCTCG------TTGGTGGCCTTGCTAGAGGTGTCACCGGAGAGAATGGCAGCCTGGACAG 34840 Query 7038 TCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAA 7097 || ||||| || || |||||||||||||| || | || || | || || ||||| | Sbjct 34839 CGGCACCGTAGGCAACAGCCTCATCGGGGTTGATGGACTTGTTGGGCTCCTTTCCGTTGA 34780 Query 7098 AATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGA 7157 | || || | | | | || | ||||| || || ||||||||||| | |||| Sbjct 34779 AGTAGTCGGTGATGAGCTTCTGGACACGGGGGATACGGGTAGATCCACCGACGAGGACGA 34720 Query 7158 TTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCA 7217 | || | || || || |||||||| | ||| ||| ||||| || | | Sbjct 34719 TCTCGTGGACAAGGGACTTGTCGATCTTAGCGTCGGTAAGGACACGGTCGACGGGCTGGA 34660 Query 7218 TACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTAT 7277 || ||||| | ||| || || ||||| ||||| |||||||| ||||| || | Sbjct 34659 TAGTGGATCGGAAAAGATCCTGGCAGAGCTCCTCGAAACGAGCACGGGTGATGGAGGTGT 34600 Query 7278 AGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATA 7337 |||| |||| || ||| | | || || || ||||||| || || || | ||||| | Sbjct 34599 AGAAGTCAATACCCTCGAAGAGAGAGTCGATCTCAATGGAGGTCTGAGCGGAAGAAGAAA 34540 Query 7338 ACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACG 7386 |||||||| || |||||||| || ||||| | ||| || || ||||| Sbjct 34539 GAGTTCGCTTGGCACGCTCACAAGCGGTTCGGAGACGTCGGAGAGCACG 34491 >seq147 Length=79699 Score = 158 bits (174), Expect = 2e-33 Identities = 363/542 (67%), Gaps = 15/542 (3%) Strand=Plus/Minus Query 7247 TCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCA 7306 ||||| ||||| |||||||| ||||| | ||| || | |||||| | | || ||| Sbjct 27485 TCCTCGAAACGGGCACGGGTGATGGACATGGTGAAGTCCTCACCGTCGAAGAGAGAGTCA 27426 Query 7307 ATTTCAATGGTTGTTTGTGC--CGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCG 7364 || |||||||| | || || || | ||| | || ||||| || |||||||| || | Sbjct 27425 ATCTCAATGGTGGCCTGGGCACCGCTGGAGAGA--GTACGCTTGGCACGCTCACAAGCAG 27368 Query 7365 TTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAA 7424 |||| | ||| || |||||||| | | || || | || ||||| || || | Sbjct 27367 TTCGGAGACGTCGGAGGGCACGGGCATCGCCAGAGAGGTCCTTCTTGGTCTTGCGACCGA 27308 Query 7425 ACTCTTCAGAGAAGTG-TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTA 7483 |||| | | |||| |||| |||| | | ||||| || | |||||| | || ||| Sbjct 27307 ACTCCTTCTTGCAGTGGTCGA-GGAGGTTAGTGTCGAAGTCCTGACCACCGAGATGGGTA 27249 Query 7484 TCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCA 7543 || || || || || ||||| |||| ||| || | ||||| | | || ||||| Sbjct 27248 TCTCCGGCAGTGGCCTTGACAGTGAAGACACCACCCTGGATGTTGAGGAGGGAGACATCG 27189 Query 7544 AACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCG 7603 || ||||||||||| || || | ||||| ||||| || | || | |||| || Sbjct 27188 AAAGTACCACCACCGAGATCGTAGATGAGGACGTTGCGCTCCTTCTC---GGACTTACCG 27132 Query 7604 ------AGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTC 7657 |||||||| || || || || || || || || || || ||||| || ||| Sbjct 27131 GCACCAAGACCGTAGGCAATGGCGGCGGCAGTAGGCTCGTTGATGATACGGAGGACGTTA 27072 Query 7658 AGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCC 7717 || || ||||| | | || || || || || || || || ||||| |||||||| Sbjct 27071 AGACCGGCAATGGAACCGGCGTCCTTGGTGGCCTGACGCTGGTTGTCGTTGAAGTAGGCG 27012 Query 7718 GGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTC 7777 ||||| || | ||| || | | ||| ||||||||||| | | || || || || ||| Sbjct 27011 GGGACAGTGATGACGGCCTTCTCGACCTTCTTACCGAGCTTGGTCTCGGCAATCTCCTTC 26952 Query 7778 AT 7779 || Sbjct 26951 AT 26950 >seq839 Length=23613 Score = 102 bits (112), Expect = 1e-16 Identities = 419/656 (64%), Gaps = 15/656 (2%) Strand=Plus/Minus Query 105463 TCGTATTTCTCGTAAAGATCTTCAAACTCTTTACCGTACACGTCTGAAAGACCCTTTGCC 105522 ||||| |||||||| ||| | || ||||| | |||||| ||| | |||||| | Sbjct 13138 TCGTACTTCTCGTACAGAGCCTCGAACTCATCACCGTAGCAGTCAGCAAGACCAGGGCAC 13079 Query 105523 TGATCAGGACAAAACAATGACCAATTACCATCGGATTCAACGCGTTTCATGAACAAATCT 105582 | | || || | | | ||| | |||| || || || |||||||| | ||| Sbjct 13078 TCGTTGGGGCACATAAGAGTCCATTCGCCATTCTTCTCGACACGCTTCATGAAGAGATCA 13019 Query 105583 GGAATCCACATGGCTGAAAAGAGGTCTCGACACCTCGCCTCTTCATCACCTTGATTCAAA 105642 || ||||| | ||| || ||||| ||| | |||| || | ||| || ||| Sbjct 13018 GGGATCCAAAGGGCCAGGAACAGGTCACGAGCGCGGACCTCCTCCTTACCGTGGTTCTTT 12959 Query 105643 CGAATTTCGAGAAAATCGAGAATATCGGCGTGCCATGGTTCTAAATAGACTGCAATAGAC 105702 || | || || || |||| | |||||||||||| || || | |||| || | | Sbjct 12958 CGGAGATCAAGGAACTCGAAGACATCGGCGTGCCAGGGCTCGAGGTAGATAGCGAAGGCA 12899 Query 105703 CCTTTACGACGC------CCCGCTTGATTGACATATCTTGCGGTTGAGTTATACACTCGT 105756 || | | ||| || | || | ||| || | || || ||| |||| || Sbjct 12898 CC---AGGTCGCTTGTTGCCACCCTGGTCGACGTAACGAGCAGTGTTGTTGAACACACGC 12842 Query 105757 AACATTGGAATAATACCATCGGATGTTCCATTTGTTCCACGAATATGTGATTTATTTGCA 105816 | ||| |||| | ||| | || || ||||| || || ||| | || | ||| Sbjct 12841 AGCATGGGAACGACACCGTTAGAAGTACCATTGGTCCCGGCAATGTAAGAGCCGGTGGCA 12782 Query 105817 CGTACATCGTGAACGTGTAACCCAATACCCCCAGCCCACTTACTGATACGCGCACACTCT 105876 || | ||| |||| || |||||||| |||||| ||| || ||||| Sbjct 12781 CGGATTCGGTGGACGTTCAAGCCAATACCACCAGCCATCTTGGAAATCATGGCACAAGTC 12722 Query 105877 TTTACTGTATCGTAAATACCGTCGATACTATCTTCCTTATTCGCAATCAGGAAACACGAT 105936 || | |||||||| ||||||||||| || || ||||| | ||| ||||| || || Sbjct 12721 TTGAGGGTATCGTAGATACCGTCGATGCTGTCCTCCTTCATATCAACAAGGAAGCATGAG 12662 Query 105937 GACATTTGTGGTCTG-GGTGTACCAGCATTGAACAGAGTTGGTGTTGCATGAATGAACAA 105995 |||| || || ||| || |||||||| ||||| || || || | |||||| |||| || Sbjct 12661 GACAGCTGAGG-CTGAGGGGTACCAGCGTTGAATAGTGTGGGGGAAGCATGAGTGAAGAA 12603 Query 105996 ACCTT--TCGATAACGCTTCGTATGTTTCCAGGACGTGATCAATATCGTGTCCATGAATA 106053 ||| | || | | |||||| |||| ||| | || ||||| | || ||| Sbjct 12602 --CTTGCTAGACATGAGGTTGTATGTCTCCAAGACACGTTCGATATCATCACCCCAGATA 12545 Query 106054 CCAATAGCGACGCGCATATAGAGATATTGGGGTGTTTCAATAATTTCACCGTCAAT 106109 |||| ||| || ||||| | | ||| || ||| ||||| ||||||||| Sbjct 12544 CCAACAGCAACACGCATGATCATGTGTTGAGGACGCTCAGCAATTTTACCGTCAAT 12489 >seq1366 Length=104692 Score = 91.5 bits (100), Expect = 2e-13 Identities = 168/243 (69%), Gaps = 5/243 (2%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 |||||||| |||||||| | ||| || || || ||||| || || || |||||||| Sbjct 16178 TCGAAATCCTCACCACCAAGGTGGGTGTCACCAGCGGTAGCGAGAACCTCGAAGATACCG 16237 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | ||||| | || |||||||| || ||||||||||| || || | || | | Sbjct 16238 TCGTCAATAGAGAGCAGAGAAACATCGAAGGTACCACCACCGAGATCGTA---GACAATG 16294 Query 7577 TTCGTATCG-TCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 || | || || | | |||||| || |||||||| |||||||| || || || || || Sbjct 16295 ATC-TGGCGCTCACCATCGTTCTTGTCAAGACCGTAGGCGATAGCGGCGGCGGTGGGCTC 16353 Query 7636 ATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 || | ||| || || ||| || || ||||| | | || || || || || ||||| Sbjct 16354 GTTGACAATTCGGAGGACGTTGAGACCGGCAATGATACCGGCGTCCTTGGTGGCCTGTCG 16413 Query 7696 TTG 7698 || Sbjct 16414 CTG 16416 Score = 82.4 bits (90), Expect = 1e-10 Identities = 96/130 (74%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 7704 CGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATT 7763 |||| |||||||| ||||| || || || |||| ||||| ||||||||||| || | Sbjct 16474 CGTTGAAGTAGGCAGGGACGGTAACAACGGCGTGGGTGACCTTCTTACCGAGGTAGCCCT 16533 Query 7764 CCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTT 7823 | |||| || ||||| ||| |||||||| | |||||||| |||| | ||||| | Sbjct 16534 CAGCGACCTCCTTCATCTTGCCGAGAACCATGGCAGAAATCTCCTCAGGAGTGAACTGCT 16593 Query 7824 TCGTTTCACC 7833 || | |||| Sbjct 16594 TCTTGGCACC 16603 >seq1310 Length=106642 Score = 84.2 bits (92), Expect = 3e-11 Identities = 140/198 (71%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 7597 CTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTT 7656 ||| ||||||||||| || | ||| || || || || || || | || ||| || ||| Sbjct 52659 CTTCTCGAGACCGTAGGCAAGAGCGGCGGCAGTAGGCTCGTTGACAACACGGAGGACGTT 52600 Query 7657 CAGGCCAGCAATAGTTG--CCGCATCTTTCGTCGCT-TGTCGTTGCGAATCGTTAAAGTA 7713 ||||| ||||| ||| | || || || || ||| ||||| || || ||||| ||||| Sbjct 52599 GAGGCCGGCAAT--TTGACCAGCGTCCTTGGT-GCTCTGTCGCTGAGAGTCGTTGAAGTA 52543 Query 7714 GGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATC 7773 ||| ||||| || || || |||| | ||| |||| ||| || | || ||| | || Sbjct 52542 GGCGGGGACGGTGACAACGGCGTTCTTGATGGGCTTAGAGAGGTAGGCCTCGGCGGTCTC 52483 Query 7774 TTTCATTTTGGTAAGAAC 7791 ||||| ||| | || || Sbjct 52482 CTTCATCTTGTTGAGGAC 52465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635120208492240