Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20langsethiae_20[genbank_20GCA_5F001292635.1_202015-09-16] 1,586 sequences; 37,543,021 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq839 241 2e-58 seq700 113 5e-20 >seq839 Length=23613 Score = 241 bits (266), Expect = 2e-58 Identities = 565/844 (67%), Gaps = 19/844 (2%) Strand=Plus/Minus Query 106478 TTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAA 106537 ||||||||||| |||||| | | |||||| | ||| || || |||| |||||| Sbjct 13348 TTGCAAACAGCGACCTCATCAGGAGCGCAGTACTCAATAATCTCAGTGCACAGGTTGGAG 13289 Query 106538 CTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGC 106597 || || || || | ||||||||||| ||||| |||||| ||||||||||||| Sbjct 13288 CTTCGGATGGTACCAAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGTGATCCTTGTAGAGC 13229 Query 106598 ATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA-CATCGGCGGC 106656 ||| | || | || ||||| ||||| | || |||||| || | ||| | | || | | | Sbjct 13228 ATGAAAGGGTTTCCAGTCTCTGTCTGGGCCTCGAGAATGGCATACCAAAGCTTCTGAGCC 13169 Query 106657 TGG-TACAATGGCGTTGGCCCGT-CCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAAC 106714 | | || | | ||| ||| | ||||| ||||||||| ||| || || || ||| Sbjct 13168 TTGATAGACTTGCGA---CCCTTACCCTCTCTCTCGTACTTCTCGTACAGAGCCTCGAAC 13112 Query 106715 TCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGA 106774 || ||||| ||| | ||||| || || || || || | ||||| ||||| Sbjct 13111 TCATCACCGTAGCAGTCAGCAAGACCAGGGCACTCGTTGGGGCACATAAGAGTCCATTCG 13052 Query 106775 CCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCT 106834 ||| || ||| || ||||||||||| || || || ||||| |||| || || || Sbjct 13051 CCATTCTTCTCGACACGCTTCATGAAGAGATCAGGGATCCAAAGGGCCAGGAACAGGTCA 12992 Query 106835 CTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCC 106894 | | || |||| || | ||| ||||| ||| | ||||||||||| | || ||| Sbjct 12991 CGAGCGCGGACCTCCTCCTTACCGTGGTTCTTTCGGAGATCAAGGAACTCGAAGACATCG 12932 Query 106895 GCGTGCCATGGCTCAAGATAGACTGCGA------TAGATCCCTTTCGACGCCCAGCTTGA 106948 |||||||| ||||| || |||| |||| || || ||| | | ||| | || Sbjct 12931 GCGTGCCAGGGCTCGAGGTAGATAGCGAAGGCACCAGGTCGCTT--GTTG-CCACCCTGG 12875 Query 106949 TTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGA 107008 | || || || || ||| ||| || || || ||||| |||| | ||| | || | Sbjct 12874 TCGACGTAACGAGCAGTGTTGTTGAACACACGCAGCATGGGAACGACACCGTTAGAAGTA 12815 Query 107009 CCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATA 107068 ||||| ||||| ||| ||| |||| | | |||| || || |||||| Sbjct 12814 CCATTGGTCCCGGCAATGTAAGAGCCGGTGGCACGGATTCGGTGGACGTTCAAGCCAATA 12755 Query 107069 CCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATT 107128 || |||||| ||| || || ||||| | | || || | |||||||||| ||| Sbjct 12754 CCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAGATACCGTCGATG 12695 Query 107129 GAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCA 107188 ||||||||| | | | ||||||||| ||||| ||| || || |||||||| Sbjct 12694 CTGTCCTCCTTCATATCAACAAGGAAGCATGAGGACAGCTGAGGCTGAGGGGTACCAGCG 12635 Query 107189 TTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGACATCTTGTCGTATGTCT 107246 ||||| || || || | || ||| ||| | | |||| ||||| || |||||||| Sbjct 12634 TTGAATAGTGTGGGGGAAGCATGAGTGA--AGAACTTGCTAGACATGAGGTTGTATGTCT 12577 Query 107247 CCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATT 107306 |||||||| || || || || || ||| || | || |||||||| | ||||| || Sbjct 12576 CCAAGACACGTTCGATATCATCACCCCAGATACCAACAGCAACACGCATGATCATGTGTT 12517 Query 107307 GGGG 107310 | || Sbjct 12516 GAGG 12513 >seq700 Length=246488 Score = 113 bits (124), Expect = 5e-20 Identities = 334/507 (66%), Gaps = 26/507 (5%) Strand=Plus/Minus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 ||||| |||| |||||||| || ||||||||||| ||| |||| ||||| ||||| Sbjct 28275 TAGTCAGCAACACGCTTCTCGAAAAAGTTGGTCTTGCCACCAAGAGAGATGTTCTCCATG 28216 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAA-----TGGGTGGC-ACCCCAACTTGTTTGAGG 117099 ||||| || || || | || || | | | | || | | | || ||| Sbjct 28215 AAGTCGAAGGGGTTGGTGGCCTTGTACACCTTCTCGTTGCCGAGGGCGAC------GAGC 28162 Query 117100 AGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGA 117159 |||||||| | || |||| ||||||| ||| | |||||||| || | ||| Sbjct 28161 AGACGATCAGCGACGAACTCGATGTACTGCTTCATGAGGTTCGAGTTCATGCCTAGCAGA 28102 Query 117160 TTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATG 117219 ||| ||||| || || || |||| | |||||| ||| || || | | |||| Sbjct 28101 GCACAAGGGAGAGCCTCAGTGAGGAACTTCTGCTCAATGGTAACGGCATCGGTGATGATG 28042 Query 117220 GCGTGGATAGTTTCGGTAGTGG---GTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCA 117276 | ||||| | | | ||| ||| || | || | || ||| || |||| Sbjct 28041 TCCTGGATCATCTGCTTGCTGGCACGTCCCTTGAGGTGAGAGTGGAGGAGG--CA-GGCA 27985 Query 117277 AACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGC 117336 || || ||| |||||||| || || || || || || || ||||| || || ||| Sbjct 27984 AAGTCGGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTAGAGAAAGTCAGACCGGGC 27925 Query 117337 ATGAGACCCCGCTTCTTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACC 117395 |||||||| |||||||| | ||| |||| | ||| || | ||| |||||||||||| Sbjct 27924 ATGAGACCACGCTTCTTGAGCCAGAAAATGGAAGCA-AAGGCACCGCTGAAGAAGATACC 27866 Query 117396 CTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTC---AAA 117452 ||| ||| ||||| |||| ||| |||| ||| ||||| ||| || |||| | Sbjct 27865 CTCAACAGCAGCAAAGGCAACAAGACGCTGGGCAAAGGA---AGAGTTCTTGTCCTGGAT 27809 Query 117453 CCATTTCATTGCCCATTTCGCCTTCTT 117479 |||| || ||||| | |||||||| Sbjct 27808 CCATCGAATAGCCCAATCAGCCTTCTT 27782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589969103630640