Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20langsethiae_20[genbank_20GCA_5F001292635.1_202015-09-16] 1,586 sequences; 37,543,021 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1088 165 2e-35 seq391 156 9e-33 seq1221 116 8e-21 >seq1088 Length=144876 Score = 165 bits (182), Expect = 2e-35 Identities = 162/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| ||||||||||| || || || ||||| ||| || || | ||||| ||| Sbjct 60693 ACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCG 60634 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||||||||| || ||||||||||| || ||||| || |||||||| || ||||| || Sbjct 60633 AGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGG 60574 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| ||||||||||| ||| ||||| |||||||| | |||||| Sbjct 60573 ATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTC 60514 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | ||||| Sbjct 60513 CCCGTAAGGGTCTTGACGAAAATCTGCAT 60485 >seq391 Length=65998 Score = 156 bits (172), Expect = 9e-33 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||||||||||||||| || || || ||||| |||| || || | ||||||||| Sbjct 44464 ACCAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCG 44523 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || ||||| || | ||| || ||||| ||||||||||| || ||||| ||| Sbjct 44524 AGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGA 44583 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||| || || ||||| || ||| || || |||||||| | ||||| Sbjct 44584 ATCTTGGACTTGACATTGTCGATGGTATCAGAAGACTCGACCTCAAGGGTGATGGTCTTG 44643 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | |||||| Sbjct 44644 CCGGTGAGGGTCTTGACGAATATTTGCAT 44672 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || ||||| || || || || ||||| ||||| || | || || | ||| || || Sbjct 44692 ACGAGATGAAGGGTTGATTCCTTCTGAATGTTGTAGTCAGACAGGGTGCGCCCGTCCTCA 44751 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || ||||| || | ||| || ||||| ||||||||||| || ||||| ||| Sbjct 44752 AGCTGCTTGCCGGCGAAAATCAATCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGA 44811 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||| || || ||||| || ||| || || |||||||| | ||||| Sbjct 44812 ATCTTGGACTTGACATTGTCGATGGTATCAGAAGACTCGACCTCAAGGGTGATGGTCTTG 44871 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || || || | |||||| Sbjct 44872 CCGGTGAGGGTCTTGACAAAGATTTGCAT 44900 >seq1221 Length=114529 Score = 116 bits (128), Expect = 8e-21 Identities = 133/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 || || || ||||| |||| || |||| ||||| ||||||||||| || |||||||| Sbjct 56450 TTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATC 56391 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 | ||| || ||||| || || ||||| || ||||| || || || |||||| || || Sbjct 56390 AATCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 56331 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 ||||||||||| || || || ||||| | ||||| || |||| || || ||||| Sbjct 56330 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 56272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109459054640462