Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20langsethiae_20[genbank_20GCA_5F001292635.1_202015-09-16] 1,586 sequences; 37,543,021 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq839 230 3e-55 seq700 113 5e-20 >seq839 Length=23613 Score = 230 bits (254), Expect = 3e-55 Identities = 561/836 (67%), Gaps = 17/836 (2%) Strand=Plus/Plus Query 75219 ACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTCTTGGAGA 75278 ||||| ||||||| || || | || ||| || || || || || ||||||||||| Sbjct 12520 ACATGATCATGCGTGTTGCTGTTGGTATCTGGGGTGATGATATCGAACGTGTCTTGGAGA 12579 Query 75279 CATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTCTTCAATGC 75336 ||||| || ||||| |||| | | ||| ||| || | || || || ||||| || Sbjct 12580 CATACAACCTCATGTCTAGCAAGTTCT--TCACTCATGCTTCCCCCACACTATTCAACGC 12637 Query 75337 TGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTCAAT 75396 |||||| || || ||| ||||| ||||||||| | | | ||||||||| || Sbjct 12638 TGGTACCCCTCAGCCTCAGCTGTCCTCATGCTTCCTTGTTGATATGAAGGAGGACAGCAT 12697 Query 75397 CAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGGTAT 75456 | |||||||||| | || || | | ||||| || || ||| |||||| ||||| Sbjct 12698 CGACGGTATCTACGATACCCTCAAGACTTGTGCCATGATTTCCAAGATGGCTGGTGGTAT 12757 Query 75457 TGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAATGGTCA 75516 ||| || || |||| | | |||| ||| ||| ||||| |||||| Sbjct 12758 TGGCTTGAACGTCCACCGAATCCGTGCCACCGGCTCTTACATTGCCGGGACCAATGGTAC 12817 Query 75517 ATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCA 75576 || | ||| | |||| ||||| || || || ||| ||| || || || || | || Sbjct 12818 TTCTAACGGTGTCGTTCCCATGCTGCGTGTGTTCAACAACACTGCTCGTTACGTCGACCA 12877 Query 75577 AGCGGGGCGTC--GCAAGG-GGT-CCATCGCGGTCTACTTGGAACCATGGCATGCCGATA 75632 | | ||| | || | ||| || |||| ||||| | || || ||||| |||||| Sbjct 12878 GG-GTGGCAACAAGCGACCTGGTGCCTTCGCTATCTACCTCGAGCCCTGGCACGCCGATG 12936 Query 75633 TCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGTAGAGATC 75692 || | ||||||||||| | ||| ||||| ||| | || |||| || | | || | Sbjct 12937 TCTTCGAGTTCCTTGATCTCCGAAAGAACCACGGTAAGGAGGAGGTCCGCGCTCGTGACC 12996 Query 75693 TCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGTGGTCAAT 75752 | || |||| ||||| || || || ||||||||||| || ||| || ||| ||| Sbjct 12997 TGTTCCTGGCCCTTTGGATCCCTGATCTCTTCATGAAGCGTGTCGAGAAGAATGGCGAAT 13056 Query 75753 GGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGTGAGGAGTTTG 75812 || ||||| | || || || || || ||||| | ||| ||||| ||||| | Sbjct 13057 GGACTCTTATGTGCCCCAACGAGTGCCCTGGTCTTGCTGACTGCTACGGTGATGAGTTCG 13116 Query 75813 AAGCCCTCTACACAAAGTATGAAGAG-GAGGGTA-GAGCCAATGCGACTGTACCA-GCCG 75869 | || || ||| ||||| || ||| ||||||| | | | || | | || || | | Sbjct 13117 AGGCTCTGTACGAGAAGTACGA-GAGAGAGGGTAAGGGTC---GCAAGTCTATCAAGGCT 13172 Query 75870 CCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTT 75928 | || | ||||| | || |||||| | | ||||| |||||||||| || | ||||| Sbjct 13173 CAGAAGCTTTGGTATGCCATTCTCGAGGCCCAGACAGAGACTGGAAACCCTTTCATGCTC 13232 Query 75929 TACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCA 75988 ||||||||| || ||| ||||| ||||||||||| | || || ||| ||||| Sbjct 13233 TACAAGGATCACTGCAACCGCAAGAGCAACCAAAAGAACCTTGGTACCATCCGAAGCTCC 13292 Query 75989 AATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAA 76044 || || ||||| || ||| | |||||| | | |||||| ||||||||||| Sbjct 13293 AACCTGTGCACTGAGATTATTGAGTACTGCGCTCCTGATGAGGTCGCTGTTTGCAA 13348 >seq700 Length=246488 Score = 113 bits (124), Expect = 5e-20 Identities = 334/507 (66%), Gaps = 26/507 (5%) Strand=Plus/Plus Query 65023 AAGAAGGCGAAATGGGCAATGAAATGGTTT---GACACAAAGTCTCGCTCCTTCGCCGAG 65079 |||||||| | ||||| || |||| | |||| || ||| ||||| ||| || Sbjct 27782 AAGAAGGCTGATTGGGCTATTCGATGGATCCAGGACAAGAACTCT---TCCTTTGCCCAG 27838 Query 65080 CGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGC-GCTAT 65138 || ||| |||| ||||| ||| ||||||||||||||| ||| | || ||| | || Sbjct 27839 CGTCTTGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGCGGTGCCTT-TGCTTCCAT 27897 Query 65139 TTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTC 65198 || ||| | |||||||| ||||||||||| || || ||||| || || || || || Sbjct 27898 TTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTGACTTTCTCTAACGAGCTCATCTC 27957 Query 65199 CCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGACTTTGCGTAATAG 65258 || || |||||||| ||| || |||||| || ||| || | || | || | Sbjct 27958 TCGTGACGAGGGTCTTCACACCGACTTTGCC-TG--CCTCCTCCACTCTCACCTCAAGGG 28014 Query 65259 AC---CCACTACCGAAACTATCCACGCCATCGTGAAAGAGGCGGTTGAGATTGAGAAAGG 65315 || ||| | | | ||||| | |||| | | || || ||| |||||| | Sbjct 28015 ACGTGCCAGCAAGCAGATGATCCAGGACATCATCACCGATGCCGTTACCATTGAGCAGAA 28074 Query 65316 GTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGAGAAGATGTCCGA 65375 |||| || || || ||||| ||| ||| | || |||||||| | ||| | Sbjct 28075 GTTCCTCACTGAGGCTCTCCCTTGTGCTCTGCTAGGCATGAACTCGAACCTCATGAAGCA 28134 Query 65376 GTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGGGT-GCCACCCA-----T 65429 |||||| |||| || | |||||||| ||| || | | | || | | | Sbjct 28135 GTACATCGAGTTCGTCGCTGATCGTCTGCTC------GTCGCCCTCGGCAACGAGAAGGT 28188 Query 65430 TTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAA 65489 | || || | || || || ||||| ||||| ||||| |||| ||| |||||||| Sbjct 28189 GTACAAGGCCACCAACCCCTTCGACTTCATGGAGAACATCTCTCTTGGTGGCAAGACCAA 28248 Query 65490 CTTCTTTGAGAAGCGAGTTGGGGACTA 65516 ||| || |||||||| |||| ||||| Sbjct 28249 CTTTTTCGAGAAGCGTGTTGCTGACTA 28275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596557773007680