Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20langsethiae_20[genbank_20GCA_5F001292635.1_202015-09-16] 1,586 sequences; 37,543,021 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq700 170 6e-37 seq2 163 8e-35 seq788 138 3e-27 seq839 136 1e-26 seq749 84.2 6e-11 >seq700 Length=246488 Score = 170 bits (188), Expect = 6e-37 Identities = 246/342 (72%), Gaps = 4/342 (1%) Strand=Plus/Plus Query 133318 CTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACATATTCTACTCTAAT 133377 ||| || || | ||||| |||||| || ||||| || ||||| ||| || || Sbjct 27649 CTTCTACGGTTTCCAGATCATGATGGAGAACATCCACTCCGAAACATACTCTCTGCTCAT 27708 Query 133378 TGATACTTACATCAAAGATACCGTCCAGAAGCACAAAC-TATTCAACGCCATTAGCGAAT 133436 ||| || |||||||| || | | |||| | || || | ||||||||| || | Sbjct 27709 TGACACCTACATCAAGGAGCCTGCTCAGA-GAACTTACCTCTTCAACGCCGTTGACACCA 27767 Query 133437 TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGA 133496 ||||||| || |||||| |||| ||||||||| |||||||||||||||| | Sbjct 27768 TTCCTTGCATCCGAAAGAAGGCTGATTGGGCTATTCGATGGATCCAGGACAAGAACTCTT 27827 Query 133497 GTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGT 133556 ||||| ||||| ||||| ||||||| || ||||| || || ||||| ||||| | Sbjct 27828 CCTTTGCCCAGCGTCTTGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGCGGTGCCT 27887 Query 133557 TCTGCT-CTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAAC 133615 | |||| | ||||| ||||| || ||||||||| | | || || ||| ||| |||||| Sbjct 27888 T-TGCTTCCATTTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTGACTTTCTCTAAC 27946 Query 133616 GAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCC 133657 || || || || | ||||||| ||||||||||| |||||| Sbjct 27947 GAGCTCATCTCTCGTGACGAGGGTCTTCACACCGACTTTGCC 27988 >seq2 Length=329948 Score = 163 bits (180), Expect = 8e-35 Identities = 214/294 (73%), Gaps = 2/294 (1%) Strand=Plus/Minus Query 302572 TCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCT 302631 ||||| | | ||||| || || |||||||||||||||||| || || || || || Sbjct 323966 TCTTCAAGAGCCTTGACCAATCGTCGCTGAATATAACCAGTTTCAGCAGTCTTGACTGCA 323907 Query 302632 GTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTA-G 302690 |||||||| ||||| | |||||| |||| || |||||||| | ||| | || ||| | Sbjct 323906 GTATCAATCAGACCTTCTCGACCAGCCATGGCGTGGAAGAAAAACTCG-CTGGGGGTAAG 323848 Query 302691 CCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGT 302750 || | || | ||| |||| ||||||||||| || ||||| || | || |||||| Sbjct 323847 GCCACGAAGGTAAGAGTTCTCGACGAAACCACGAGCTTCGGGAGAGTAATCATCCTTGGT 323788 Query 302751 AAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTG 302810 || || |||||||| | || || | ||| | || ||||||||||| || ||| |||| Sbjct 323787 GAAATGAGGCAGGGTACGGTACTTGAAACCGAAAGGAATACGCTTTCCTTCGACGATCTG 323728 Query 302811 CTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCC 302864 ||| || | | || | ||||||| |||||||| | | | ||||||||| || Sbjct 323727 CTGACCGACGAGCGCAGTCATCTGTGAAATATTGATAGAAGAGCCCTTGGAACC 323674 Score = 84.2 bits (92), Expect = 6e-11 Identities = 103/140 (74%), Gaps = 3/140 (2%) Strand=Plus/Minus Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872 |||||||| | | ||| || ||||| | || ||||| |||||| | ||||||||| Sbjct 324743 AGAATTTCCTTGAGACGAGGCACACCGAGAGTGACGTT---CTTGGAAGACACACCAGCA 324687 Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932 || |||||||| ||||| || | ||||| | ||||||||||| || || || | Sbjct 324686 AAATGGAAAGTGTTCAGTGTCATCTGAGTGGCGGGCTCACCAATGGACTGGGCAGCCAAA 324627 Query 301933 ATACCAACCATTTCTCCTGG 301952 | |||||||||||| || || Sbjct 324626 ACACCAACCATTTCACCAGG 324607 >seq788 Length=215759 Score = 138 bits (152), Expect = 3e-27 Identities = 373/563 (66%), Gaps = 12/563 (2%) Strand=Plus/Minus Query 251431 TGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTGGTGAAGCGAGATGCACCG 251490 ||||| | | | ||||| || | ||| | || || |||| |||| || |||||| Sbjct 94287 TGGACTCGGAAGGCATCTGACACCTCAAACAGACGCTCCTTCAAGAAGGCAGCGGCACCG 94228 Query 251491 TGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAGCCCTA 251550 || | ||||||||||||||| ||||| || |||||||| ||||||||||| ||||| | | Sbjct 94227 TGAGCAATCATACAATCACGTTCCATCTCTCCGAAACGGAGACCACCATCTCGAGCACGA 94168 Query 251551 CCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGTTGCTTA 251610 |||||| |||| || || || | | | | ||||| || ||| || ||| Sbjct 94167 CCCTCGACAGGTTGCCGGGTCATAATCTGGACGGGACCACGGGCACGGGCGTGAATCTTG 94108 Query 251611 TCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGATGCTCGA--AG 251668 || | ||||| || |||||||||||| | | || |||| ||||| || || | Sbjct 94107 TCGTCCACCATGTGACGAAGACGCTGGTAGTACGTAGGTCCGAAGAAGA--CTTGAGCAC 94050 Query 251669 GCATTTGCTCTCCAGTTAGAGCGTTATACATAACTTCGTTTCCATTAGATTCATAACCAA 251728 | | | |||||| || | |||||||| || ||| || ||||| ||||| Sbjct 94049 GGAGCTTACGTCCAGTGTGACCATTATACATGACCTCGAAACCTCGAGATTGGTAACCGT 93990 Query 251729 G-TTTCT--GTAGCTCTGAAGCAATATCACCAATCTTGAATTTGCTAAAACTGGTGCCGT 251785 | ||||| | || ||||| | | | | ||| | | || || ||| Sbjct 93989 GCTTTCTCAGGAGTTCTGACACGGAGT---CGACGGTGACATCAGTGAATGGCGTTGCGT 93933 Query 251786 CTCCGTAAAGACCCATTTGAATCAACACTTTGCCTAAAAGTGTCTCTTTCAGTTGGGCGA 251845 | || | | |||| | | | || || | ||||| ||| ||| ||||| | Sbjct 93932 CACCCTCCATACCCTCCAGTGTTGAGACCTTACTCAAAAGACACTCAATCAAATGGGCAA 93873 Query 251846 TAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCATCAG 251905 | ||||||||| ||||| || || || |||||||| ||||| ||| ||| || || Sbjct 93872 TTGTCATACGAGACGGAATGGCGTGAGGGTTGATGATAATGTCAGGTGTCAAACCTTCTC 93813 Query 251906 CAGTGAAGGGCATATCCTTTTCCTCAATAA-TGTTTCCAATAGTTCCCTTTTGTCCGTGA 251964 |||| |||||||||| || || |||| | || || || |||||||| |||||| Sbjct 93812 TGCTGAAAGGCATATCCTCTT-GTCGATAAGTAACACCGATTGTACCCTTTTGACCGTGA 93754 Query 251965 CGAGAACTGAACTTATCACCAAT 251987 |||||| ||||| |||||||| Sbjct 93753 CGAGAAGCAAACTTGTCACCAAT 93731 >seq839 Length=23613 Score = 136 bits (150), Expect = 1e-26 Identities = 486/755 (64%), Gaps = 15/755 (2%) Strand=Plus/Minus Query 155626 CGCTGTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCT 155685 ||| ||| || | ||||||| ||||||||| || || |||||| || | ||||| | Sbjct 13323 CGCAGTACTCAATAATCTCAGTGCACAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTTT 13264 Query 155686 GGTTAGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCT 155745 |||| || | ||| || ||||||||| || ||| | ||| |||| ||||| ||| Sbjct 13263 GGTTGCTCTTGCGGTTGCAGTGATCCTTGTAGAGCATGAAAGGGTTTCCAGTCTCTGTCT 13204 Query 155746 GTGCGTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTT 155805 | || || ||||| ||| || | | || || || |||| | || | Sbjct 13203 GGGCCTCGAGAATGGCATACCAAAGCTTCTGAGCCTTGATAGACTTGCGACCCTTACCCT 13144 Query 155806 CCGACTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAG 155865 | ||| || ||| ||||| | | | || |||||||| || ||| || |||| Sbjct 13143 CTCTCTCGTACTTCTCGTACAGAGCCTCGAACTCATCACCGTAGCAGTCAGCAAGACCAG 13084 Query 155866 GGCACTTATCGGGGCAAAACAGCGACCAAATT-----TTATTACCGATTACACGCTCCAT 155920 |||||| | |||||| | || | ||| || || || ||| |||||| ||| Sbjct 13083 GGCACTCGTTGGGGCACATAAGAGTCCA--TTCGCCATTCTTCTCGA---CACGCTTCAT 13029 Query 155921 AAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCC 155980 || | |||| ||||| || ||| ||||| | || |||||| | || Sbjct 13028 GAAGAGATCAGGGATCCAAAGGGCCAGGAACAGGTCACGAGCGCGGACCTCCTCCTTACC 12969 Query 155981 GTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACAT 156040 ||| ||||| || || || | ||| || | ||| | || ||||| || || || Sbjct 12968 GTGGTTCTTTCGGAGATCAAGGAACTCGAAGACATCGGCGTGCCAGGGCTCGAGGTAGAT 12909 Query 156041 AGCAAAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAA 156097 ||| || |||| | |||| |||||||| || || || |||||||| || ||||| Sbjct 12908 AGCGAAGGCACCAGGTCGCTTGTTGCCACCCTGGTCGACGTAACGAGCAGTGTTGTTGAA 12849 Query 156098 GACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACC 156157 |||| ||||| |||| | ||| || ||||| |||||||| ||| ||| | || || Sbjct 12848 CACACGCAGCATGGGAACGACACCGTTAGAAGTACCATTGGTCCCGGCAATGTAAGAGCC 12789 Query 156158 AGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT-TTAGAAATTTGAG 156216 | | || | || | | | ||||||||||| | |||| || ||||| | Sbjct 12788 GGTGGCACGGATTCGGTGGACGTTCAAGCCAATACCACCAG-CCATCTTGGAAATCATGG 12730 Query 156217 CGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGAT 156276 | || ||| | |||| | | ||||| || || || || | ||| | || Sbjct 12729 CACAAGTCTTGAGGGTATCGTAGATACCGTCGATGCTGTCCTCCTTCATATCAACAAGGA 12670 Query 156277 AGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAA 156336 |||| || | ||||| | || || ||||||||||||||||| || | |||||| Sbjct 12669 AGCATGAGGACAGCTGAGGCTGAGGGGTACCAGCGTTGAATAGTGTGGGGGAAGCATGAG 12610 Query 156337 TAAAATACTTATTAGACATATAATCGTATGTCTCC 156371 | || |||| ||||||| | |||||||||| Sbjct 12609 TGAAGAACTTGCTAGACATGAGGTTGTATGTCTCC 12575 >seq749 Length=34486 Score = 84.2 bits (92), Expect = 6e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 354016 GCGAGAGCACCAAGCGAGTCACGGTCGAGGAAATTAGTAGGTTCGTCAAGGATAAGAACG 354075 || ||| |||| || ||||| ||||| | ||| |||||||| |||||||| | ||||| Sbjct 3354 GCAAGACCACCGAGAGAGTCTCGGTCCAAGAAGTTAGTAGGCTCGTCAAGCACAAGAAGA 3295 Query 354076 TGCGGCTCCATCCACATTGCTGCAGCCAGAACTACCTTAACCTTCTGTCCGCCTGATAG 354134 || || | ||||||| ||| | || | || ||||| ||||||||||| || || || Sbjct 3294 TGGGGGTTGTTCCACATGGCTCCGGCAATGACGACCTTCACCTTCTGTCCACCAGAAAG 3236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471787691746482