Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20langsethiae_20[genbank_20GCA_5F001292635.1_202015-09-16] 1,586 sequences; 37,543,021 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq670 138 1e-26 seq839 118 1e-20 seq700 102 1e-15 seq557 96.9 4e-14 >seq670 Length=49916 Score = 138 bits (152), Expect = 1e-26 Identities = 96/109 (88%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 ||| | |||||||||||||| ||||| || ||||| | || |||||| |||| |||||| Sbjct 23056 GCCTCTAACTACCTCGACATTAAGCCCCTTCTCGACGTCGGATGCAAGACTGTCGCCAAC 22997 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294 ||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct 22996 ATGATCAAGGGCAAGTCACCAGAGGAGATCCGCAAGACCTTTAACATCA 22948 >seq839 Length=23613 Score = 118 bits (130), Expect = 1e-20 Identities = 206/300 (69%), Gaps = 0/300 (0%) Strand=Plus/Minus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 |||||||||||| || || |||| ||| || || || |||||||| |||| ||||| || Sbjct 12878 CTGGTCGACGTAACGAGCAGTGTTGTTGAACACACGCAGCATGGGAACGACACCGTTAGA 12819 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 || ||||| || || | ||| | ||||| ||| || | ||| || ||||| Sbjct 12818 AGTACCATTGGTCCCGGCAATGTAAGAGCCGGTGGCACGGATTCGGTGGACGTTCAAGCC 12759 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 || || || ||| |||||| || | || || ||||| || |||||||| || || Sbjct 12758 AATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAGATACCGTC 12699 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 ||| ||| ||||||| || || || ||||| || || || || || | || || Sbjct 12698 GATGCTGTCCTCCTTCATATCAACAAGGAAGCATGAGGACAGCTGAGGCTGAGGGGTACC 12639 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 |||||||| || ||||| | || ||||| |||| | |||||| || ||| || Sbjct 12638 AGCGTTGAATAGTGTGGGGGAAGCATGAGTGAAGAACTTGCTAGACATGAGGTTGTATGT 12579 >seq700 Length=246488 Score = 102 bits (112), Expect = 1e-15 Identities = 128/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || | || ||| ||||||||||||||||||||| | || ||||| Sbjct 28284 GCCTTCTGGTAGTCAGCAACACGCTTCTCGAAAAAGTTGGTCTTGCCACCAAGAGAGATG 28225 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||||| | |||||| ||| ||| ||||| | || Sbjct 28224 TTCTCCATGAAGTCGAAGGGGTTGGTGGCCTTGTACACCTTCTCGTTGCCGAGGGCGACG 28165 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCC 868866 ||||| || || ||||| |||||||||||||| ||||||| | ||||||||| Sbjct 28164 AGCAGACGATCAGCGACGAACTCGATGTACTGCTTCATGAGGTTCGAGTTCATGCC 28109 Score = 87.8 bits (96), Expect = 2e-11 Identities = 201/292 (69%), Gaps = 17/292 (6%) Strand=Plus/Minus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTT-GCTAAAGGCGAGGCCGGGCATGAGGCCGCGCT 869237 ||| ||||| ||| ||| | ||||| | |||| | || ||||||||||| || |||| Sbjct 27970 ACCCTCGTCACGAGAGATGAGCTCGTTAGAGAAAGTC-AGACCGGGCATGAGACCACGCT 27912 Query 869238 TCTTGAGCCAAAAGATGGCGCAGAAACTGC-CCG-AGAAAAAGATGCCCTCGACGGCGGC 869295 |||||||||| || ||| | || || || ||| ||| ||||| ||||| || || || Sbjct 27911 TCTTGAGCCAGAAAATG--GAAGCAAAGGCACCGCTGAAGAAGATACCCTCAACAGCAGC 27854 Query 869296 AAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG---TTGATCCACTTCAT 869352 |||| | | || |||| ||||||| | ||| | |||| | |||||| || Sbjct 27853 AAAGGCAACAAGACGCTGGGCAAAG--GAAGAG----TTCTTGTCCTGGATCCATCGAAT 27800 Query 869353 CGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGT-GGT 869411 ||||| || ||||| || | | | || | ||||| | |||| ||||||| || Sbjct 27799 AGCCCAATCAGCCTTCTTTCGGATGCAAGGAATGGTGTCAACGGCGTTGAAGAGGTAAGT 27740 Query 869412 CCTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 | | | || || ||||||| |||||||| || || || || || || || Sbjct 27739 TC-TCTGAGCAGGCTCCTTGATGTAGGTGTCAATGAGCAGAGAGTATGTTTC 27689 >seq557 Length=292410 Score = 96.9 bits (106), Expect = 4e-14 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 19047 GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAG 19106 ||||||| ||||| || || || || || ||||| | ||| | || ||||||||| Sbjct 273764 GACAGCACTGGCGGTACCGTCACCTGTGTCATCCGCAATGCGCCCTCTGGTCTCGGCGAG 273823 Query 19107 CCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACC 19166 || ||||| |||||| | ||||| | ||||||||||||||| |||| ||||| ||| | Sbjct 273824 CCTTGCTTCGACAAGCTGCAGGCCACCCTCGCCCACGCCATGATGTCCATCCCCGCCGTC 273883 Query 19167 AAGGGATTCGAGATTGGCAGCGGGTT 19192 |||| || ||| | ||| ||| || Sbjct 273884 AAGGCCTTTGAGCTAGGCTCCGGCTT 273909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107009045412762