Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20langsethiae_20[genbank_20GCA_5F001292635.1_202015-09-16]
1,586 sequences; 37,543,021 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq700 134 2e-25
seq670 129 9e-24
seq1188 104 4e-16
>seq700
Length=246488
Score = 134 bits (148), Expect = 2e-25
Identities = 237/335 (71%), Gaps = 19/335 (6%)
Strand=Plus/Minus
Query 794340 ACCTTCGTCGCGACTGATCAATTCGTT-GCTAAAG-CAGAGGCCGGGCATGAGGCCGCGC 794397
||| ||||| ||| ||| | ||||| | |||| |||| ||||||||||| || |||
Sbjct 27970 ACCCTCGTCACGAGAGATGAGCTCGTTAGAGAAAGTCAGA--CCGGGCATGAGACCACGC 27913
Query 794398 TTCTTGAGCCAAAAGATGGCACAGAAACTGC-CCGA-GAAAAAGATGCCCTCGACGGCGG 794455
||||||||||| || |||| | | || || ||| ||| ||||| ||||| || || |
Sbjct 27912 TTCTTGAGCCAGAAAATGGAA--GCAAAGGCACCGCTGAAGAAGATACCCTCAACAGCAG 27855
Query 794456 CAAAGCCGACGAGCCGCTCGGCAAA---AGTGTCCAGGCCCTCTTTGTTGATCCACTTCA 794512
||||| | || || |||| |||||| || || | | ||| |||||| |
Sbjct 27854 CAAAGGCAACAAGACGCTGGGCAAAGGAAGAGTTCTTGTCCTG------GATCCATCGAA 27801
Query 794513 TCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTG-G 794571
| ||||| || ||||| || | | | || | ||||| | |||| ||||||| |
Sbjct 27800 TAGCCCAATCAGCCTTCTTTCGGATGCAAGGAATGGTGTCAACGGCGTTGAAGAGGTAAG 27741
Query 794572 TCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGG 794631
| || || | || ||||||| ||||||||| ||||| || ||||| || || ||||||
Sbjct 27740 TTCT-CTGAGCAGGCTCCTTGATGTAGGTGTCAATGAGCAGAGAGTATGTTTCGGAGTGG 27682
Query 794632 ATGTTTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666
||||| || || ||||||||| || || |||||
Sbjct 27681 ATGTTCTCCATCATGATCTGGAAACCGTAGAAGCA 27647
Score = 102 bits (112), Expect = 1e-15
Identities = 167/235 (71%), Gaps = 7/235 (3%)
Strand=Plus/Minus
Query 793917 ACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAAC 793976
|| ||| ||||||||||||||||||||| | || ||||| |||||| | |||
Sbjct 28266 ACACGCTTCTCGAAAAAGTTGGTCTTGCCACCAAGAGAGATGTTCTCCATGAAGTCGAAG 28207
Query 793977 GGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA--GCGACGCAAGCAGGCGGTCGGCGA 794034
||||||| | | ||| ||||||| |||| |||||| ||||| || || ||||
Sbjct 28206 GGGTTGGTGGCCTTGTACACCTTCTCGTTGCCGAGGGCGACG--AGCAGACGATCAGCGA 28149
Query 794035 CGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGC-CACGGGCAGC 794093
|||| || |||||||| ||||||| | ||||||||| | || || || ||| ||
Sbjct 28148 CGAACTCGATGTACTGCTTCATGAGGTTCGAGTTCATGCCTAGCAGAGCACAAGGG-AGA 28090
Query 794094 GACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGATGATGATCTGCCTGG 794148
| ||| ||| |||| | ||| || ||||| ||| ||||||| | |||||
Sbjct 28089 GCCTCAGTGAGGAACTTCTGCTCAATGGTAACGGCATCGGTGATGATGT-CCTGG 28036
>seq670
Length=49916
Score = 129 bits (142), Expect = 9e-24
Identities = 94/109 (86%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706
||| | |||||||||||||| |||||||| ||||| | || |||||||| || ||||||
Sbjct 23056 GCCTCTAACTACCTCGACATTAAGCCCCTTCTCGACGTCGGATGCAAGACTGTCGCCAAC 22997
Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755
| |||||||||||||| || ||||| ||||||||||||||||||||||
Sbjct 22996 ATGATCAAGGGCAAGTCACCAGAGGAGATCCGCAAGACCTTTAACATCA 22948
>seq1188
Length=119647
Score = 104 bits (114), Expect = 4e-16
Identities = 78/92 (85%), Gaps = 0/92 (0%)
Strand=Plus/Minus
Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530
||||||||| ||||||||||||||||| |||||||||||| |||| || || ||| | |
Sbjct 9985 GTACTTGGTAACGGCCTTGGTACCCTCGGAGACGGCGTGCTTGGCAAGCTCACCGGGGAG 9926
Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGG 1485562
||| ||||| || | |||||||||||| ||||
Sbjct 9925 GATGAGGCGGACAGAGGTCTGGATCTCTCGGG 9894
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7916077689946254
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |