Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20langsethiae_20[genbank_20GCA_5F001292635.1_202015-09-16] 1,586 sequences; 37,543,021 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq700 134 2e-25 seq670 129 9e-24 seq1188 104 4e-16 >seq700 Length=246488 Score = 134 bits (148), Expect = 2e-25 Identities = 237/335 (71%), Gaps = 19/335 (6%) Strand=Plus/Minus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTT-GCTAAAG-CAGAGGCCGGGCATGAGGCCGCGC 794397 ||| ||||| ||| ||| | ||||| | |||| |||| ||||||||||| || ||| Sbjct 27970 ACCCTCGTCACGAGAGATGAGCTCGTTAGAGAAAGTCAGA--CCGGGCATGAGACCACGC 27913 Query 794398 TTCTTGAGCCAAAAGATGGCACAGAAACTGC-CCGA-GAAAAAGATGCCCTCGACGGCGG 794455 ||||||||||| || |||| | | || || ||| ||| ||||| ||||| || || | Sbjct 27912 TTCTTGAGCCAGAAAATGGAA--GCAAAGGCACCGCTGAAGAAGATACCCTCAACAGCAG 27855 Query 794456 CAAAGCCGACGAGCCGCTCGGCAAA---AGTGTCCAGGCCCTCTTTGTTGATCCACTTCA 794512 ||||| | || || |||| |||||| || || | | ||| |||||| | Sbjct 27854 CAAAGGCAACAAGACGCTGGGCAAAGGAAGAGTTCTTGTCCTG------GATCCATCGAA 27801 Query 794513 TCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTG-G 794571 | ||||| || ||||| || | | | || | ||||| | |||| ||||||| | Sbjct 27800 TAGCCCAATCAGCCTTCTTTCGGATGCAAGGAATGGTGTCAACGGCGTTGAAGAGGTAAG 27741 Query 794572 TCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGG 794631 | || || | || ||||||| ||||||||| ||||| || ||||| || || |||||| Sbjct 27740 TTCT-CTGAGCAGGCTCCTTGATGTAGGTGTCAATGAGCAGAGAGTATGTTTCGGAGTGG 27682 Query 794632 ATGTTTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 ||||| || || ||||||||| || || ||||| Sbjct 27681 ATGTTCTCCATCATGATCTGGAAACCGTAGAAGCA 27647 Score = 102 bits (112), Expect = 1e-15 Identities = 167/235 (71%), Gaps = 7/235 (3%) Strand=Plus/Minus Query 793917 ACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAAC 793976 || ||| ||||||||||||||||||||| | || ||||| |||||| | ||| Sbjct 28266 ACACGCTTCTCGAAAAAGTTGGTCTTGCCACCAAGAGAGATGTTCTCCATGAAGTCGAAG 28207 Query 793977 GGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA--GCGACGCAAGCAGGCGGTCGGCGA 794034 ||||||| | | ||| ||||||| |||| |||||| ||||| || || |||| Sbjct 28206 GGGTTGGTGGCCTTGTACACCTTCTCGTTGCCGAGGGCGACG--AGCAGACGATCAGCGA 28149 Query 794035 CGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGC-CACGGGCAGC 794093 |||| || |||||||| ||||||| | ||||||||| | || || || ||| || Sbjct 28148 CGAACTCGATGTACTGCTTCATGAGGTTCGAGTTCATGCCTAGCAGAGCACAAGGG-AGA 28090 Query 794094 GACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGATGATGATCTGCCTGG 794148 | ||| ||| |||| | ||| || ||||| ||| ||||||| | ||||| Sbjct 28089 GCCTCAGTGAGGAACTTCTGCTCAATGGTAACGGCATCGGTGATGATGT-CCTGG 28036 >seq670 Length=49916 Score = 129 bits (142), Expect = 9e-24 Identities = 94/109 (86%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 ||| | |||||||||||||| |||||||| ||||| | || |||||||| || |||||| Sbjct 23056 GCCTCTAACTACCTCGACATTAAGCCCCTTCTCGACGTCGGATGCAAGACTGTCGCCAAC 22997 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755 | |||||||||||||| || ||||| |||||||||||||||||||||| Sbjct 22996 ATGATCAAGGGCAAGTCACCAGAGGAGATCCGCAAGACCTTTAACATCA 22948 >seq1188 Length=119647 Score = 104 bits (114), Expect = 4e-16 Identities = 78/92 (85%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||| ||||||||||||||||| |||||||||||| |||| || || ||| | | Sbjct 9985 GTACTTGGTAACGGCCTTGGTACCCTCGGAGACGGCGTGCTTGGCAAGCTCACCGGGGAG 9926 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGG 1485562 ||| ||||| || | |||||||||||| |||| Sbjct 9925 GATGAGGCGGACAGAGGTCTGGATCTCTCGGG 9894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916077689946254