Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20langsethiae_20[genbank_20GCA_5F001292635.1_202015-09-16]
1,586 sequences; 37,543,021 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq700 178 2e-38
seq839 91.5 2e-12
>seq700
Length=246488
Score = 178 bits (196), Expect = 2e-38
Identities = 358/516 (69%), Gaps = 30/516 (6%)
Strand=Plus/Plus
Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834
||| ||| |||||||| || ||||||||||| ||||| ||||| ||||||||| |||| |
Sbjct 27433 GATCTGGCAAATGTAC-AAGAAGGCCGAGGCTTCCTTCTGGACAGCCGAGGAGATCGATC 27491
Query 1455835 TCGGCGCCGA-CACGGTCCACTGG-------GTGTCGCTGAGCGACGACGAGCGCCATTT 1455886
| | || | | | ||||| || | ||| | ||||||| | ||
Sbjct 27492 TTTCCAAGGATCTCCATG-ACTGGAACAACCGTCTAACTGCG----GACGAGCAGTACTT 27546
Query 1455887 CATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGG 1455946
|||| ||| | || || || ||| |||||| |||||| || || ||||||||| |
Sbjct 27547 CATCTCCCACATTCTTGCTTTCTTT-GCCGCCTCCGATGGTATTGTCAACGAGAACCTTG 27605
Query 1455947 CCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGA 1456006
| || || | ||||| || | || ||||| || | || ||||| |||||||
Sbjct 27606 TTGAGCGATTCAGCGGCGAGGTTCAGATCCCTGAGGCTCGATGCTTCTACGGTTTCCAGA 27665
Query 1456007 TCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGG 1456066
|| || || ||||||||||| ||||| ||||| || || || ||||||||| ||||||
Sbjct 27666 TCATGATGGAGAACATCCACTCCGAAACATACTCTCTGCTCATTGACACCTACATCAAGG 27725
Query 1456067 ACCCGGTCGAGAAGGAC-CACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAA 1456125
| || | || || || ||||||| |||| | ||||| | || | | | ||
Sbjct 27726 AGCCTGCTCAG-AGAACTTACCTCTTCAACGCCGTTGACACCATTCCTTGCATCCGAAAG 27784
Query 1456126 AAGGCCGACTGGGCGATGAAGTGGATC---AACAAGGAGGGCCTCGACACTTTGCCGAGC 1456182
||||| || ||||| || |||||| ||||| | ||| | ||||||| |||
Sbjct 27785 AAGGCTGATTGGGCTATTCGATGGATCCAGGACAAGAA----CTCTTC-CTTTGCCCAGC 27839
Query 1456183 GGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTC-TCGG-GCAGTTTCTGCGCCAT 1456239
| || || | |||||| || || ||||| ||||| ||| ||| || || || ||||
Sbjct 27840 GTCTTGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGCGGTGCCTTTGCT--TCCAT 27897
Query 1456240 CTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275
|| |||||||||||||| || ||||||||||||||
Sbjct 27898 TTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCT 27933
>seq839
Length=23613
Score = 91.5 bits (100), Expect = 2e-12
Identities = 198/291 (68%), Gaps = 4/291 (1%)
Strand=Plus/Plus
Query 259894 CATGTCGCAGCA-GTTGTTCACCTCA-GCGACGCCCACGCTCTTTAATGCCGGCACGCCG 259951
|||||| |||| ||| ||||| ||| || | ||||| || || || || || || ||
Sbjct 12590 CATGTCT-AGCAAGTTCTTCAC-TCATGCTTCCCCCACACTATTCAACGCTGGTACCCCT 12647
Query 259952 CGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATC 260011
| || ||| || || ||||| || | || ||||||| || ||||| || |||
Sbjct 12648 CAGCCTCAGCTGTCCTCATGCTTCCTTGTTGATATGAAGGAGGACAGCATCGACGGTATC 12707
Query 260012 TATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCC 260071
|| || || |||||| || || | || |||||| ||| || || || || || |
Sbjct 12708 TACGATACCCTCAAGACTTGTGCCATGATTTCCAAGATGGCTGGTGGTATTGGCTTGAAC 12767
Query 260072 GCACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGC 260131
| ||| | || ||| | ||| | ||| | || || ||||| || || |||||
Sbjct 12768 GTCCACCGAATCCGTGCCACCGGCTCTTACATTGCCGGGACCAATGGTACTTCTAACGGT 12827
Query 260132 CTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182
| || |||||||| || || || ||| |||| || || ||||||||||||
Sbjct 12828 GTCGTTCCCATGCTGCGTGTGTTCAACAACACTGCTCGTTACGTCGACCAG 12878
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177658227384932
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |