Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20langsethiae_20[genbank_20GCA_5F001292635.1_202015-09-16] 1,586 sequences; 37,543,021 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq700 178 2e-38 seq839 91.5 2e-12 >seq700 Length=246488 Score = 178 bits (196), Expect = 2e-38 Identities = 358/516 (69%), Gaps = 30/516 (6%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| || ||||||||||| ||||| ||||| ||||||||| |||| | Sbjct 27433 GATCTGGCAAATGTAC-AAGAAGGCCGAGGCTTCCTTCTGGACAGCCGAGGAGATCGATC 27491 Query 1455835 TCGGCGCCGA-CACGGTCCACTGG-------GTGTCGCTGAGCGACGACGAGCGCCATTT 1455886 | | || | | | ||||| || | ||| | ||||||| | || Sbjct 27492 TTTCCAAGGATCTCCATG-ACTGGAACAACCGTCTAACTGCG----GACGAGCAGTACTT 27546 Query 1455887 CATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGG 1455946 |||| ||| | || || || ||| |||||| |||||| || || ||||||||| | Sbjct 27547 CATCTCCCACATTCTTGCTTTCTTT-GCCGCCTCCGATGGTATTGTCAACGAGAACCTTG 27605 Query 1455947 CCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGA 1456006 | || || | ||||| || | || ||||| || | || ||||| ||||||| Sbjct 27606 TTGAGCGATTCAGCGGCGAGGTTCAGATCCCTGAGGCTCGATGCTTCTACGGTTTCCAGA 27665 Query 1456007 TCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGG 1456066 || || || ||||||||||| ||||| ||||| || || || ||||||||| |||||| Sbjct 27666 TCATGATGGAGAACATCCACTCCGAAACATACTCTCTGCTCATTGACACCTACATCAAGG 27725 Query 1456067 ACCCGGTCGAGAAGGAC-CACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAA 1456125 | || | || || || ||||||| |||| | ||||| | || | | | || Sbjct 27726 AGCCTGCTCAG-AGAACTTACCTCTTCAACGCCGTTGACACCATTCCTTGCATCCGAAAG 27784 Query 1456126 AAGGCCGACTGGGCGATGAAGTGGATC---AACAAGGAGGGCCTCGACACTTTGCCGAGC 1456182 ||||| || ||||| || |||||| ||||| | ||| | ||||||| ||| Sbjct 27785 AAGGCTGATTGGGCTATTCGATGGATCCAGGACAAGAA----CTCTTC-CTTTGCCCAGC 27839 Query 1456183 GGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTC-TCGG-GCAGTTTCTGCGCCAT 1456239 | || || | |||||| || || ||||| ||||| ||| ||| || || || |||| Sbjct 27840 GTCTTGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGCGGTGCCTTTGCT--TCCAT 27897 Query 1456240 CTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 || |||||||||||||| || |||||||||||||| Sbjct 27898 TTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCT 27933 >seq839 Length=23613 Score = 91.5 bits (100), Expect = 2e-12 Identities = 198/291 (68%), Gaps = 4/291 (1%) Strand=Plus/Plus Query 259894 CATGTCGCAGCA-GTTGTTCACCTCA-GCGACGCCCACGCTCTTTAATGCCGGCACGCCG 259951 |||||| |||| ||| ||||| ||| || | ||||| || || || || || || || Sbjct 12590 CATGTCT-AGCAAGTTCTTCAC-TCATGCTTCCCCCACACTATTCAACGCTGGTACCCCT 12647 Query 259952 CGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATC 260011 | || ||| || || ||||| || | || ||||||| || ||||| || ||| Sbjct 12648 CAGCCTCAGCTGTCCTCATGCTTCCTTGTTGATATGAAGGAGGACAGCATCGACGGTATC 12707 Query 260012 TATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCC 260071 || || || |||||| || || | || |||||| ||| || || || || || | Sbjct 12708 TACGATACCCTCAAGACTTGTGCCATGATTTCCAAGATGGCTGGTGGTATTGGCTTGAAC 12767 Query 260072 GCACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGC 260131 | ||| | || ||| | ||| | ||| | || || ||||| || || ||||| Sbjct 12768 GTCCACCGAATCCGTGCCACCGGCTCTTACATTGCCGGGACCAATGGTACTTCTAACGGT 12827 Query 260132 CTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 | || |||||||| || || || ||| |||| || || |||||||||||| Sbjct 12828 GTCGTTCCCATGCTGCGTGTGTTCAACAACACTGCTCGTTACGTCGACCAG 12878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177658227384932