Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20langsethiae_20[genbank_20GCA_5F001292635.1_202015-09-16] 1,586 sequences; 37,543,021 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq839 228 1e-54 seq700 102 1e-16 >seq839 Length=23613 Score = 228 bits (252), Expect = 1e-54 Identities = 558/837 (67%), Gaps = 19/837 (2%) Strand=Plus/Minus Query 111251 TTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAA 111310 ||||||||||| |||||| | | |||||| | ||| || || || | |||||| Sbjct 13348 TTGCAAACAGCGACCTCATCAGGAGCGCAGTACTCAATAATCTCAGTGCACAGGTTGGAG 13289 Query 111311 CTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGC 111370 || || || || | ||||||||||| ||||| |||||| ||||||||||||| Sbjct 13288 CTTCGGATGGTACCAAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGTGATCCTTGTAGAGC 13229 Query 111371 ATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA-CATCGGCGGC 111429 ||| | || | || ||||| ||||| | | |||||| || | ||||| | || | | | Sbjct 13228 ATGAAAGGGTTTCCAGTCTCTGTCTGGGCCTCGAGAATGGCATACCAAAGCTTCTGAGCC 13169 Query 111430 TGG-TACAATGGCGTTGGCCCGT-CCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAAC 111487 | | || | | ||| ||| | ||||| ||||||||| ||| || || || ||| Sbjct 13168 TTGATAGACTTGCGA---CCCTTACCCTCTCTCTCGTACTTCTCGTACAGAGCCTCGAAC 13112 Query 111488 TCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGA 111547 || ||||| ||| | ||||| || || || || || | ||||| ||||| Sbjct 13111 TCATCACCGTAGCAGTCAGCAAGACCAGGGCACTCGTTGGGGCACATAAGAGTCCATTCG 13052 Query 111548 CCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCT 111607 ||| | ||| || ||||||||||| || || || ||||| |||| || || || Sbjct 13051 CCATTCTTCTCGACACGCTTCATGAAGAGATCAGGGATCCAAAGGGCCAGGAACAGGTCA 12992 Query 111608 CTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCC 111667 | | || |||| || | ||| ||||| ||| | ||||||||||| | || ||| Sbjct 12991 CGAGCGCGGACCTCCTCCTTACCGTGGTTCTTTCGGAGATCAAGGAACTCGAAGACATCG 12932 Query 111668 GCGTGCCATGGCTCAAGATAGACTGCGA------TAGATCCCTTTCGACGCCCAGCTTGA 111721 |||||||| ||||| || |||| |||| || || ||| | | ||| | || Sbjct 12931 GCGTGCCAGGGCTCGAGGTAGATAGCGAAGGCACCAGGTCGCTT--GTTG-CCACCCTGG 12875 Query 111722 TTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGA 111781 | || || || || ||| ||| || || || ||||| |||| | ||| | || | Sbjct 12874 TCGACGTAACGAGCAGTGTTGTTGAACACACGCAGCATGGGAACGACACCGTTAGAAGTA 12815 Query 111782 CCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATA 111841 ||||| ||||| ||| ||| |||| | | |||| || || |||||| Sbjct 12814 CCATTGGTCCCGGCAATGTAAGAGCCGGTGGCACGGATTCGGTGGACGTTCAAGCCAATA 12755 Query 111842 CCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATT 111901 || |||||| ||| || || ||||| | | || || | |||||||||| ||| Sbjct 12754 CCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAGATACCGTCGATG 12695 Query 111902 GAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCA 111961 ||||||||| | | | ||||||||| ||||| ||| || || |||||||| Sbjct 12694 CTGTCCTCCTTCATATCAACAAGGAAGCATGAGGACAGCTGAGGCTGAGGGGTACCAGCG 12635 Query 111962 TTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGACATCTTGTCGTATGTCT 112019 ||||| || || || | || ||| ||| | | |||| ||||| || |||||||| Sbjct 12634 TTGAATAGTGTGGGGGAAGCATGAGTGA--AGAACTTGCTAGACATGAGGTTGTATGTCT 12577 Query 112020 CCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGT 112076 |||||||| || || || || || ||| || | || || ||||||| ||||| Sbjct 12576 CCAAGACACGTTCGATATCATCACCCCAGATACCAACAGCAACACGCATGATCATGT 12520 >seq700 Length=246488 Score = 102 bits (112), Expect = 1e-16 Identities = 302/459 (66%), Gaps = 20/459 (4%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 ||||| | || |||||||| || ||||||||||| ||| |||| ||||| ||||| Sbjct 28275 TAGTCAGCAACACGCTTCTCGAAAAAGTTGGTCTTGCCACCAAGAGAGATGTTCTCCATG 28216 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAA-----TGGGTGGC-ACCCCAACTTGTTTGAGG 122484 ||||| || || || | || || | | | | || | | | || ||| Sbjct 28215 AAGTCGAAGGGGTTGGTGGCCTTGTACACCTTCTCGTTGCCGAGGGCGAC------GAGC 28162 Query 122485 AGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGG 122544 |||||||| | || |||| ||||||| ||| | |||||||| || | || Sbjct 28161 AGACGATCAGCGACGAACTCGATGTACTGCTTCATGAGGTTCGAGTTCATGCCTAGCAGA 28102 Query 122545 TTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATG 122604 ||| ||||| || || || |||| | |||||| ||| || || | | |||| Sbjct 28101 GCACAAGGGAGAGCCTCAGTGAGGAACTTCTGCTCAATGGTAACGGCATCGGTGATGATG 28042 Query 122605 GCGTGGATAGTTTCGGTAGTGG---GTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCA 122661 | ||||| | | | ||| ||| || | || | || ||| || |||| Sbjct 28041 TCCTGGATCATCTGCTTGCTGGCACGTCCCTTGAGGTGAGAGTGGAGGAGG--CA-GGCA 27985 Query 122662 AACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGC 122721 || || ||| |||||||| || || || || || || || ||||| ||||| ||| Sbjct 27984 AAGTCGGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTAGAGAAAGTCAGACCGGGC 27925 Query 122722 ATGAGACCCCGCTTCTTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACC 122780 |||||||| |||||||| | ||| |||| | ||| || | ||| |||||||||||| Sbjct 27924 ATGAGACCACGCTTCTTGAGCCAGAAAATGGAAGCA-AAGGCACCGCTGAAGAAGATACC 27866 Query 122781 CTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGA 122819 ||| ||| ||||| |||| ||| || | ||| ||||| Sbjct 27865 CTCAACAGCAGCAAAGGCAACAAGACGCTGGGCAAAGGA 27827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628019549265600