Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20langsethiae_20[genbank_20GCA_5F001292635.1_202015-09-16] 1,586 sequences; 37,543,021 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq839 221 1e-52 seq700 161 1e-34 seq921 95.1 1e-14 >seq839 Length=23613 Score = 221 bits (244), Expect = 1e-52 Identities = 959/1497 (64%), Gaps = 65/1497 (4%) Strand=Plus/Plus Query 104229 ACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTCTTGGAGA 104288 ||||| ||||||| || || | ||||| || || || || || ||||||||||| Sbjct 12520 ACATGATCATGCGTGTTGCTGTTGGTATCTGGGGTGATGATATCGAACGTGTCTTGGAGA 12579 Query 104289 CATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTCTTCAATGC 104346 ||||| || ||||| |||| | | ||| ||| || | || || || ||||| || Sbjct 12580 CATACAACCTCATGTCTAGCAAGTTCT--TCACTCATGCTTCCCCCACACTATTCAACGC 12637 Query 104347 TGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTCAAT 104406 |||||| || || || ||||| ||||||||| | | | ||||||||| || Sbjct 12638 TGGTACCCCTCAGCCTCAGCTGTCCTCATGCTTCCTTGTTGATATGAAGGAGGACAGCAT 12697 Query 104407 CAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGGTAT 104466 | |||||||||| | || || | | ||||| || || ||| |||||| ||||| Sbjct 12698 CGACGGTATCTACGATACCCTCAAGACTTGTGCCATGATTTCCAAGATGGCTGGTGGTAT 12757 Query 104467 TGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAATGGTCA 104526 ||| || || |||| | | |||| ||| ||| ||||| |||||| Sbjct 12758 TGGCTTGAACGTCCACCGAATCCGTGCCACCGGCTCTTACATTGCCGGGACCAATGGTAC 12817 Query 104527 ATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCA 104586 || | ||| | |||| ||||| || || || ||| ||| || || || || | || Sbjct 12818 TTCTAACGGTGTCGTTCCCATGCTGCGTGTGTTCAACAACACTGCTCGTTACGTCGACCA 12877 Query 104587 AGCTGGGCGTCGAAAGGGATCTA------TCGCAGTCTATCTTGAGCCATGGCACGCGGA 104640 | ||| | | ||| || || |||| |||| || ||||| |||||||| || Sbjct 12878 GGGTGG-CAAC--AAGCGACCTGGTGCCTTCGCTATCTACCTCGAGCCCTGGCACGCCGA 12934 Query 104641 TATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGG--CGCGGTGCCGC 104698 | || | ||||||||||| | || ||||| ||| | ||||||| |||| | || Sbjct 12935 TGTCTTCGAGTTCCTTGATCTCCGAAAGAACCACGGTAAGGAGGAGGTCCGCGCT--CGT 12992 Query 104699 GATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGC 104758 || || ||| || || ||||| || ||||||||||||||| | || ||| ||| |||| Sbjct 12993 GACCTGTTCCTGGCCCTTTGGATCCCTGATCTCTTCATGAAGCGTGTCGAGAAGAATGGC 13052 Query 104759 AATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGAGGAG 104818 | ||| |||| | || || || || |||||||| | || | ||||| ||| Sbjct 13053 GAATGGACTCTTATGTGCCCCAACGAGTGCCCTGGTCTTGCTGACTGCTACGGTGATGAG 13112 Query 104819 TTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTGCCA--G 104876 || || || || ||| ||||||||| ||| ||| || | | || | | || | Sbjct 13113 TTCGAGGCTCTGTACGAGAAGTACGAGAGAGAGGGTAAGG-GTC-GCAAGTCTATCAAGG 13170 Query 104877 CTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATG 104935 || | || | | ||| | || |||||| || | || || |||||||| | || | |||| Sbjct 13171 CT-CAGAAGCTTTGGTATGCCATTCTCGAGGCCCAGACAGAGACTGGAAACCCTTTCATG 13229 Query 104936 CTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGT 104995 || ||||| || ||| |||| ||||| || |||||||| | ||| ||| || Sbjct 13230 CTCTACAAGGATCACTGCAACCGCAAGAGCAACCAAAAGAACCTTGGTACCATCCGAAGC 13289 Query 104996 TCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAAC 105055 ||||| || || || || || | || | | |||||| ||||| || ||| Sbjct 13290 TCCAACCTGTGCACTGAGATTATTGAGTACTGCGCTCCTGATGAGGTCGCTGTTTGCAAC 13349 Query 105056 CTCGCATCAATCGCTCTCCC---------CAAGTATGTGGATCCAGAGACAAAGACATTT 105106 || || || | |||| || ||| || | ||| | | | | ||| || Sbjct 13350 CTTGCCTCCTTGTCTCTGCCCTCTTTCATCAACTACGAAGATGC--TGTCTACGAC--TT 13405 Query 105107 GATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATT 105166 | | || || ||||| || || || || | ||||| |||| |||| Sbjct 13406 CA-----AGAAGCTGCACGAGGTCACTCAAGTCGTTGTCCGCAACCTGAACAAGATTATC 13460 Query 105167 GATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATT 105226 || || ||||| || | ||||| || || ||| | ||||| || ||| Sbjct 13461 GACGTGAACCACTACCCTGTCCAAGAGGCTCGCAACAGCAACATGCGTCACCGACCCATT 13520 Query 105227 GGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCC 105286 ||||| |||||||| ||||| || |||| ||| || | ||| | ||||| || Sbjct 13521 GGTCTTGGTGTTCAAGGTCTTGCTGATGCCTTCCTTGCTCTCCGCATGCCCTTTGAGTCT 13580 Query 105287 GACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAG 105346 ||| || || | || || || || |||||||| || ||||| || ||| Sbjct 13581 CCCGAGGCTCGTGAGCTGAACAAGCAAATCTTCGAGACCATCTACCACGCTGCCCTT--- 13637 Query 105347 GCGAGTTC---AGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCA 105403 | | ||| | || | || ||| || ||||| || ||||| |||| ||||| Sbjct 13638 ACCACTTCTGTACAGCTCGCCAAGGAGGAGGGTCCCTACTCCACCTTCAAGGGCTCTCCT 13697 Query 105404 GCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAG-CTTC--AC--- 105457 || || | || | || || ||||| |||| |||| || |||| |||| || Sbjct 13698 GCCTCTGAGGGTATTCTCCAGTTTGACATGT-GGAATGT-----CAAGCCTTCTGACCTT 13751 Query 105458 TACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTC 105517 | || |||||| | ||| || ||||| | ||| | || |||||||| ||| Sbjct 13752 TGGGAGTGGGAATCCCTCCGAGAGGATGTCAAGACTCACGGTATCCGCAACAGTCTGCTC 13811 Query 105518 ATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAA 105577 | ||||| ||||| || ||| ||| | || || | || || || || ||||| || Sbjct 13812 GTTGCTCCTATGCCTACTGCCAGTACCTCGCAGATTCTTGGCAACAACGAGTGCTTCGAG 13871 Query 105578 CCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAA- 105636 ||||| || | |||||||| | | || ||| || || ||||| | ||||||| Sbjct 13872 CCCTATACCTCCAACATCTACCAACGCCGAGTCCTTGCTGGCGAGTTCCAGGTTGTCAAC 13931 Query 105637 --CAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAG 105691 | || |||| |||| || || || ||||| |||||| | | ||||||| Sbjct 13932 CCCTGGCTTCTCAAGGAT---CTTGTCGACATGGGTCTTTGGTCCGATGCTATGAAG 13985 >seq700 Length=246488 Score = 161 bits (178), Expect = 1e-34 Identities = 358/523 (68%), Gaps = 13/523 (2%) Strand=Plus/Plus Query 94441 TGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGAC---TCTAAAT 94497 ||||| || || ||| | ||||| || |||||| | | || ||||| | ||||| | Sbjct 27470 TGGACAGCCGAGGAGATCGATCTTTCCAAGGATCTCCATGACTGGAACAACCGTCTAACT 27529 Query 94498 GAAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGATCCGATGGAATT 94557 | | || || | ||||| |||| || || |||||||| | |||||||| ||| Sbjct 27530 GCGGACGAGCAGTACTTCATCTCCCACATTCTTGCTTTCTTTGCCGCCTCCGATGGTATT 27589 Query 94558 GTTTTTGAGAATATCAATAA-CAACTTTGCTGATGAGGTGCA-ATCCTCTGAAGCGAGAT 94615 || ||||| | | | | | | || | ||||| || |||| |||| || ||| Sbjct 27590 GTCAACGAGAACCTTGTTGAGCGATTCAGCGGC-GAGGTTCAGATCC-CTGAGGCTCGAT 27647 Query 94616 CCTTCTATGCGTATCAGTGTCATAATGAA-ATGGTGCATGGGGAGACATACAGTAAACTC 94674 |||||| | | ||| |||| ||| | | | || || |||||| | ||| Sbjct 27648 GCTTCTACGGTTTCCAGA-TCATGATGGAGAACATCCACTCCGAAACATACTCTCTGCTC 27706 Query 94675 ATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACA 94734 || |||| || || ||||| |||| ||| | | ||||| | ||| | | || Sbjct 27707 ATTGACACCTACATCAAGGAGCCTGCTCAGAGAACTTACCTCTTCAACGCCGTTGACACC 27766 Query 94735 GTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTCGCG 94793 |||| || || | |||||| || ||||||||||| ||| | | |||| | | Sbjct 27767 ATTCCTTGCATCCGAAAGAAGGCTGATTGGGCTATTCGATGGATCCAGGACAAGAACTC- 27825 Query 94794 TTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTC 94853 ||||||||| |||| || | || ||||| ||||||||||||||||||| ||| | Sbjct 27826 TTCCTTTGCCCAGCGTCTTGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGCGGTGC 27885 Query 94854 CTTCTGC-GCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCA 94912 ||| ||| | |||| |||||||||||||| ||||||||||| ||||| ||||| | Sbjct 27886 CTT-TGCTTCCATTTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTGACTTTCTCTA 27944 Query 94913 ACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||||||| ||||||||||||||||| || ||| || ||||| Sbjct 27945 ACGAGCTCATCTCTCGTGACGAGGGTCTTCACACCGACTTTGC 27987 >seq921 Length=435044 Score = 95.1 bits (104), Expect = 1e-14 Identities = 191/275 (69%), Gaps = 10/275 (4%) Strand=Plus/Minus Query 9703 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAG 9762 ||| |||||||| || ||||||| ||| || || || | ||| | | | || || Sbjct 338387 GGCGTCAATCTCGTCGATGAAGATGATACAGGGAGCGTTCTTACGACCCTCGGCGAATAG 338328 Query 9763 ATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGC-GGAAC 9821 || ||||||||| | || ||||||||||||||||| ||||| | | | | || Sbjct 338327 GTCTCGTACACGCGAAGGTCCAACACCAACAAACATCTCGACAAATTCGGAGCCACTCAC 338268 Query 9822 ATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 9881 | | || |||||| || || ||||| || |||| ||| || | || ||||| | Sbjct 338267 ACT-GAAGAAGGGCACTCCGGACTCACCAGCCGTGGCCTTGGCAAGCAACGTTTTACCAG 338209 Query 9882 TACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC--ACTTC-CAAAGT 9938 |||| || || || | || |||||||||||| |||||||| || |||| |||| | Sbjct 338208 TACCAGGGGGTCCAGCCAAGATGGCACCTCGTGGGATCTTGGCACCTAGCTTCTCAAACT 338149 Query 9939 ATCTCTCAGGTTGCTT-AAGAAAATCCACAATTTC 9972 ||||||| ||||| ||||| | ||||| ||| Sbjct 338148 ---TCTCAGGCTGCTTCAAGAAGCT-CACAAATTC 338118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583249236854640