Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20langsethiae_20[genbank_20GCA_5F001292635.1_202015-09-16] 1,586 sequences; 37,543,021 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq391 141 3e-28 seq2 131 5e-25 seq1088 109 2e-18 >seq391 Length=65998 Score = 141 bits (156), Expect = 3e-28 Identities = 178/243 (73%), Gaps = 1/243 (0%) Strand=Plus/Plus Query 140495 ACTAATATTTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTG 140554 || ||||||| ||||||||| || | | || || |||||||| || || || || || Sbjct 44659 ACGAATATTTG-CATACCACCGCGAAGGCGGAGGACGAGATGAAGGGTTGATTCCTTCTG 44717 Query 140555 AATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACG 140614 ||| || || ||||| | || ||||| || ||||| || || || || || || | || Sbjct 44718 AATGTTGTAGTCAGACAGGGTGCGCCCGTCCTCAAGCTGCTTGCCGGCGAAAATCAATCG 44777 Query 140615 TTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGA 140674 ||||| ||||||||||| || || || |||||||| || | || ||||| || || | Sbjct 44778 CTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGT 44837 Query 140675 ATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTG 140734 |||||| | || || ||||| || | ||||| ||||| || || || ||||| || || Sbjct 44838 ATCAGAAGACTCGACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATTTG 44897 Query 140735 CAT 140737 ||| Sbjct 44898 CAT 44900 Score = 123 bits (136), Expect = 8e-23 Identities = 172/241 (71%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 140497 TAATATTTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAA 140556 ||||| ||| |||||| || | | || || || |||||||| ||||| || || | Sbjct 44432 TAATAGCCTACTGACCACCGCGGAGACGGAGGACCAGGTGAAGAGTGGACTCCTTCTGGA 44491 Query 140557 TATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTT 140616 | || || || || | || || |||||||| || || || || || || || | || | Sbjct 44492 TGTTGTAGTCGGAGAGGGTGCGGCCATCTTCGAGCTGCTTGCCGGCGAAAATCAATCGCT 44551 Query 140617 GCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAAT 140676 |||| ||||||||||| || || || |||||||| || | || ||||| || || | || Sbjct 44552 GCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTAT 44611 Query 140677 CAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCA 140736 |||| | || || ||||| || | ||||| ||||| || || || || || || |||| Sbjct 44612 CAGAAGACTCGACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAATATTTGCA 44671 Query 140737 T 140737 | Sbjct 44672 T 44672 >seq2 Length=329948 Score = 131 bits (144), Expect = 5e-25 Identities = 439/677 (65%), Gaps = 16/677 (2%) Strand=Plus/Plus Query 349262 GAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAA 349321 || || || || || || || |||||| |||| || || |||| ||| | || ||||| Sbjct 33683 GATATCATCGCCAACGACCAGGGTAACCGAACTACCCCCTCATTCGTCGGTTTCACCGAC 33742 Query 349322 ACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACG 349381 || |||||| ||||||||||| | || || || || | || || || | || || Sbjct 33743 ACCGAGCGTCTGATTGGTGATGCCGCCAAGAACCAGGTCGCCATGAACCCCCAGAACACA 33802 Query 349382 GTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTT-----TTCTGACAAATCTACACAA 349435 || || || || |||||| | || ||| | |||||| | |||| || || Sbjct 33803 GTCTTCGACGCCAAGCGATTGATCGGTCGCAAGTTTGCCGATGCTGAGG--TC----CAG 33856 Query 349436 TCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATT 349495 | || | || || || || || || | || | | ||| || | || || | || Sbjct 33857 GCCGACATGAAGCACTTCCCCTTCACAATCGT-CGACAAG--GGCGGCAAGCCCAACATC 33913 Query 349496 GAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTT 349555 |||||||| | || ||||| | || || ||||| || || || | ||| | Sbjct 33914 GAGGTTGAGTTCAAGGGTGAGAAGAAGACCTTCACTCCCGAGGAGATCTCCGCCATGATC 33973 Query 349556 TTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTT 349615 | || ||| || | |||||| | || | || || || || | | || ||| Sbjct 33974 CTCACCAAGATGCGTGAGACTGCTGAGTCTTACCTCGGCGAGACTGTCAACAACGCCGTT 34033 Query 349616 ATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGC 349675 | || || || ||||| || || || | |||||| || || || ||||| || | Sbjct 34034 GTCACCGTCCCTGCCTACTTCAACGACTCTCAGCGTCAGGCTACCAAGGATGCCGGTCTC 34093 Query 349676 ATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATAT 349735 || || || | || ||||| |||| || || || || || ||||| || ||||| || Sbjct 34094 ATCGCCGGTCTCAACGTTCTCCGAATCATCAACGAGCCTACCGCTGCCGCCATTGCCTAC 34153 Query 349736 GGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGT 349795 || || || || | | || || ||| | || || || ||| | ||||||||| Sbjct 34154 GGTCTCGACAAGAAGGTCGAGGGCGAGCGCAATGTCCTGATCTTCGATCTTGGTGGTGGT 34213 Query 349796 ACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCT 349855 || || ||||| || || || || |||| ||||| || || || ||||| | ||||| Sbjct 34214 ACCTTCGATGTCTCTCTCCTTACCATTGAGGAGGGTATCTTCGAGGTTAAGTCCACTGCC 34273 Query 349856 GGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAA 349915 ||||| || || | ||||| || || || || || ||||| || || || || || Sbjct 34274 GGTGACACTCACTTGGGTGGTGAGGACTTCGACAACCGTCTGGTCAACCACTTCGTCAAC 34333 Query 349916 GAATTTAAGCGTCAAGC 349932 || || ||||| ||||| Sbjct 34334 GAGTTCAAGCG-CAAGC 34349 Score = 111 bits (122), Expect = 5e-19 Identities = 172/246 (70%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 378201 ATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAACCAGTTTGACTAGTTTTAACTGC 378260 |||||| | || || | | |||||| |||||||||||||| | ||| || ||||| Sbjct 323967 ATCTTCAAGAGCCTTGACCAATCGTCGCTGAATATAACCAGTTTCAGCAGTCTTGACTGC 323908 Query 378261 AGTATCAATTAAACCAACACGACCACCCATTGCATGGAAGAATAATTCAGTAGGAGTAAG 378320 ||||||||| | ||| | |||||| |||| || |||||||| || || | || ||||| Sbjct 323907 AGTATCAATCAGACCTTCTCGACCAGCCATGGCGTGGAAGAAAAACTCGCTGGGGGTAAG 323848 Query 378321 TCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCCTGGCGAATCATCATATTTTGT 378380 |||| || | || |||| | || || | || | || || | ||||| || || Sbjct 323847 GCCACGAAGGTAAGAGTTCTCGACGAAACCACGAGCTTCGGGAGAGTAATCATCCTTGGT 323788 Query 378381 ATAATGAGGTAATGTACGATTCTCAAACCCATATGGAATTCGTTTTCCATCAACATTCTG 378440 ||||||| | ||||| | || || || | ||||| || ||||| || || |||| Sbjct 323787 GAAATGAGGCAGGGTACGGTACTTGAAACCGAAAGGAATACGCTTTCCTTCGACGATCTG 323728 Query 378441 TTGACC 378446 ||||| Sbjct 323727 CTGACC 323722 Score = 102 bits (112), Expect = 2e-16 Identities = 105/137 (77%), Gaps = 3/137 (2%) Strand=Plus/Minus Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517 || |||||||| | || || ||| || || | ||||||||||| |||||||| || Sbjct 324728 CGAGGCACACCGAGAGTGACGTTC---TTGGAAGACACACCAGCAAAATGGAAAGTGTTC 324672 Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577 || || | ||||| | |||||||||||| ||||| || || | ||| ||||||||||| Sbjct 324671 AGTGTCATCTGAGTGGCGGGCTCACCAATGGACTGGGCAGCCAAAACACCAACCATTTCA 324612 Query 377578 CCAGGATTGACAATAGC 377594 ||||| || |||| ||| Sbjct 324611 CCAGGGTTAACAAAAGC 324595 >seq1088 Length=144876 Score = 109 bits (120), Expect = 2e-18 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | || || || || ||||| ||||| || || || || || || Sbjct 60712 ACCACCACGGAGGCGGAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGCT 60653 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | || || ||||| || || || || ||||||||||| || || ||||| || || || Sbjct 60652 CAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGG 60593 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 ||| || || || ||||| || || | || || || ||||| | || || | || || Sbjct 60592 AATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCAC 60533 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || | ||||| || || || || || || ||||||||||| Sbjct 60532 CTCAAGGGTGATCGTCTTCCCCGTAAGGGTCTTGACGAAAATCTGCAT 60485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515223609083558