Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20langsethiae_20[genbank_20GCA_5F001292635.1_202015-09-16]
1,586 sequences; 37,543,021 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq391 141 3e-28
seq2 131 5e-25
seq1088 109 2e-18
>seq391
Length=65998
Score = 141 bits (156), Expect = 3e-28
Identities = 178/243 (73%), Gaps = 1/243 (0%)
Strand=Plus/Plus
Query 140495 ACTAATATTTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTG 140554
|| ||||||| ||||||||| || | | || || |||||||| || || || || ||
Sbjct 44659 ACGAATATTTG-CATACCACCGCGAAGGCGGAGGACGAGATGAAGGGTTGATTCCTTCTG 44717
Query 140555 AATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACG 140614
||| || || ||||| | || ||||| || ||||| || || || || || || | ||
Sbjct 44718 AATGTTGTAGTCAGACAGGGTGCGCCCGTCCTCAAGCTGCTTGCCGGCGAAAATCAATCG 44777
Query 140615 TTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGA 140674
||||| ||||||||||| || || || |||||||| || | || ||||| || || |
Sbjct 44778 CTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGT 44837
Query 140675 ATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTG 140734
|||||| | || || ||||| || | ||||| ||||| || || || ||||| || ||
Sbjct 44838 ATCAGAAGACTCGACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATTTG 44897
Query 140735 CAT 140737
|||
Sbjct 44898 CAT 44900
Score = 123 bits (136), Expect = 8e-23
Identities = 172/241 (71%), Gaps = 0/241 (0%)
Strand=Plus/Plus
Query 140497 TAATATTTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAA 140556
||||| ||| |||||| || | | || || || |||||||| ||||| || || |
Sbjct 44432 TAATAGCCTACTGACCACCGCGGAGACGGAGGACCAGGTGAAGAGTGGACTCCTTCTGGA 44491
Query 140557 TATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTT 140616
| || || || || | || || |||||||| || || || || || || || | || |
Sbjct 44492 TGTTGTAGTCGGAGAGGGTGCGGCCATCTTCGAGCTGCTTGCCGGCGAAAATCAATCGCT 44551
Query 140617 GCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAAT 140676
|||| ||||||||||| || || || |||||||| || | || ||||| || || | ||
Sbjct 44552 GCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGTAT 44611
Query 140677 CAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCA 140736
|||| | || || ||||| || | ||||| ||||| || || || || || || ||||
Sbjct 44612 CAGAAGACTCGACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAATATTTGCA 44671
Query 140737 T 140737
|
Sbjct 44672 T 44672
>seq2
Length=329948
Score = 131 bits (144), Expect = 5e-25
Identities = 439/677 (65%), Gaps = 16/677 (2%)
Strand=Plus/Plus
Query 349262 GAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAA 349321
|| || || || || || || |||||| |||| || || |||| ||| | || |||||
Sbjct 33683 GATATCATCGCCAACGACCAGGGTAACCGAACTACCCCCTCATTCGTCGGTTTCACCGAC 33742
Query 349322 ACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACG 349381
|| |||||| ||||||||||| | || || || || | || || || | || ||
Sbjct 33743 ACCGAGCGTCTGATTGGTGATGCCGCCAAGAACCAGGTCGCCATGAACCCCCAGAACACA 33802
Query 349382 GTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTT-----TTCTGACAAATCTACACAA 349435
|| || || || |||||| | || ||| | |||||| | |||| || ||
Sbjct 33803 GTCTTCGACGCCAAGCGATTGATCGGTCGCAAGTTTGCCGATGCTGAGG--TC----CAG 33856
Query 349436 TCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATT 349495
| || | || || || || || || | || | | ||| || | || || | ||
Sbjct 33857 GCCGACATGAAGCACTTCCCCTTCACAATCGT-CGACAAG--GGCGGCAAGCCCAACATC 33913
Query 349496 GAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTT 349555
|||||||| | || ||||| | || || ||||| || || || | ||| |
Sbjct 33914 GAGGTTGAGTTCAAGGGTGAGAAGAAGACCTTCACTCCCGAGGAGATCTCCGCCATGATC 33973
Query 349556 TTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTT 349615
| || ||| || | |||||| | || | || || || || | | || |||
Sbjct 33974 CTCACCAAGATGCGTGAGACTGCTGAGTCTTACCTCGGCGAGACTGTCAACAACGCCGTT 34033
Query 349616 ATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGC 349675
| || || || ||||| || || || | |||||| || || || ||||| || |
Sbjct 34034 GTCACCGTCCCTGCCTACTTCAACGACTCTCAGCGTCAGGCTACCAAGGATGCCGGTCTC 34093
Query 349676 ATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATAT 349735
|| || || | || ||||| |||| || || || || || ||||| || ||||| ||
Sbjct 34094 ATCGCCGGTCTCAACGTTCTCCGAATCATCAACGAGCCTACCGCTGCCGCCATTGCCTAC 34153
Query 349736 GGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGT 349795
|| || || || | | || || ||| | || || || ||| | |||||||||
Sbjct 34154 GGTCTCGACAAGAAGGTCGAGGGCGAGCGCAATGTCCTGATCTTCGATCTTGGTGGTGGT 34213
Query 349796 ACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCT 349855
|| || ||||| || || || || |||| ||||| || || || ||||| | |||||
Sbjct 34214 ACCTTCGATGTCTCTCTCCTTACCATTGAGGAGGGTATCTTCGAGGTTAAGTCCACTGCC 34273
Query 349856 GGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAA 349915
||||| || || | ||||| || || || || || ||||| || || || || ||
Sbjct 34274 GGTGACACTCACTTGGGTGGTGAGGACTTCGACAACCGTCTGGTCAACCACTTCGTCAAC 34333
Query 349916 GAATTTAAGCGTCAAGC 349932
|| || ||||| |||||
Sbjct 34334 GAGTTCAAGCG-CAAGC 34349
Score = 111 bits (122), Expect = 5e-19
Identities = 172/246 (70%), Gaps = 0/246 (0%)
Strand=Plus/Minus
Query 378201 ATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAACCAGTTTGACTAGTTTTAACTGC 378260
|||||| | || || | | |||||| |||||||||||||| | ||| || |||||
Sbjct 323967 ATCTTCAAGAGCCTTGACCAATCGTCGCTGAATATAACCAGTTTCAGCAGTCTTGACTGC 323908
Query 378261 AGTATCAATTAAACCAACACGACCACCCATTGCATGGAAGAATAATTCAGTAGGAGTAAG 378320
||||||||| | ||| | |||||| |||| || |||||||| || || | || |||||
Sbjct 323907 AGTATCAATCAGACCTTCTCGACCAGCCATGGCGTGGAAGAAAAACTCGCTGGGGGTAAG 323848
Query 378321 TCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCCTGGCGAATCATCATATTTTGT 378380
|||| || | || |||| | || || | || | || || | ||||| || ||
Sbjct 323847 GCCACGAAGGTAAGAGTTCTCGACGAAACCACGAGCTTCGGGAGAGTAATCATCCTTGGT 323788
Query 378381 ATAATGAGGTAATGTACGATTCTCAAACCCATATGGAATTCGTTTTCCATCAACATTCTG 378440
||||||| | ||||| | || || || | ||||| || ||||| || || ||||
Sbjct 323787 GAAATGAGGCAGGGTACGGTACTTGAAACCGAAAGGAATACGCTTTCCTTCGACGATCTG 323728
Query 378441 TTGACC 378446
|||||
Sbjct 323727 CTGACC 323722
Score = 102 bits (112), Expect = 2e-16
Identities = 105/137 (77%), Gaps = 3/137 (2%)
Strand=Plus/Minus
Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517
|| |||||||| | || || ||| || || | ||||||||||| |||||||| ||
Sbjct 324728 CGAGGCACACCGAGAGTGACGTTC---TTGGAAGACACACCAGCAAAATGGAAAGTGTTC 324672
Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577
|| || | ||||| | |||||||||||| ||||| || || | ||| |||||||||||
Sbjct 324671 AGTGTCATCTGAGTGGCGGGCTCACCAATGGACTGGGCAGCCAAAACACCAACCATTTCA 324612
Query 377578 CCAGGATTGACAATAGC 377594
||||| || |||| |||
Sbjct 324611 CCAGGGTTAACAAAAGC 324595
>seq1088
Length=144876
Score = 109 bits (120), Expect = 2e-18
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569
||||||||| | | || || || || ||||| ||||| || || || || || ||
Sbjct 60712 ACCACCACGGAGGCGGAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGCT 60653
Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629
| || || ||||| || || || || ||||||||||| || || ||||| || || ||
Sbjct 60652 CAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGG 60593
Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689
||| || || || ||||| || || | || || || ||||| | || || | || ||
Sbjct 60592 AATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCAC 60533
Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
||||| || | ||||| || || || || || || |||||||||||
Sbjct 60532 CTCAAGGGTGATCGTCTTCCCCGTAAGGGTCTTGACGAAAATCTGCAT 60485
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515223609083558
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |