Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20langsethiae_20[genbank_20GCA_5F001292635.1_202015-09-16] 1,586 sequences; 37,543,021 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq839 253 2e-62 seq933 129 6e-25 >seq839 Length=23613 Score = 253 bits (280), Expect = 2e-62 Identities = 514/758 (68%), Gaps = 24/758 (3%) Strand=Plus/Plus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| || || | |||||| ||||| || | |||||| ||||| ||| Sbjct 12526 TCATGCGTGTTGCTGTTGGTATCTGGGGTGATGATATCGAACGTGTCTTGGAGACATACA 12585 Query 53253 ACTTAATG---AGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTA 53309 || | ||| ||| |||| ||| || || || | || || || ||||||||||||| Sbjct 12586 ACCTCATGTCTAGC---AAGTTCTTCACTCATGCTTCCCCCACACTATTCAACGCTGGTA 12642 Query 53310 CGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACG 53369 | ||| |||||| |||| |||||||| || | |||||||| ||| ||||||| Sbjct 12643 CCCCTCAGCCTCAGCTGTCCTCATGCTTCCTTGTTGATATGAAGGAGGACAGCATCGACG 12702 Query 53370 GCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTA 53429 | |||||||| || |||||| |||||| || |||||| | | |||||||| || Sbjct 12703 GTATCTACGATACCCTCAAGACTTGTGCCATGATTTCCAAGATGGCTGGTGGTATTGGCT 12762 Query 53430 TCCACTGCT--CGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGC 53487 | || | |||| ||||||| | |||| | || ||||| || || | Sbjct 12763 TGAACGTCCACCGAA--TCCGTGCCACCGGCTCTTACATTGCCGGGACCAATGGTACTTC 12820 Query 53488 CGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGG 53547 | || |||| || ||||| || || ||||||||||| || || |||||| ||||||| Sbjct 12821 TAACGGTGTCGTTCCCATGCTGCGTGTGTTCAACAACACTGCTCGTTACGTCGACCAGGG 12880 Query 53548 TGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTAT 53607 ||| ||||| || | ||||| |||||||||||||| ||||||||||| | | Sbjct 12881 TGGCAACAAGCGACCTGGTGCCTTCGCTATCTACCTCGAGCCCTGGCACGCCGATGTCTT 12940 Query 53608 GGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT 53667 ||||| || || || || ||| || ||| | || ||| | ||| ||||||||||| Sbjct 12941 CGAGTTCCTTGATCTCCGAAAGAACCACGGTAAGGAGGAGGTCCGCGCTCGTGACCTGTT 13000 Query 53668 TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTA 53727 || || ||||| || || ||||||||| | || |||||| | | || ||| Sbjct 13001 CCTGGCCCTTTGGATCCCTGATCTCTTCATGAAGCGTGTCGAGAAGAATGGCGAATGGAC 13060 Query 53728 CCTGATGTGCCCGAACGAGTGCCCCGG-CCTCCAGGGTGTCTACGGTGAGGAGTTTAACG 53786 || |||||||| ||||||||||| || | | | | || ||||||||| ||||| | | Sbjct 13061 TCTTATGTGCCCCAACGAGTGCCCTGGTCTTGCTGACTG-CTACGGTGATGAGTTCGAGG 13119 Query 53787 AGATGTATCGGACGTAC------GCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGC 53840 |||| || |||| | | | |||| ||| ||| ||||||| | Sbjct 13120 CTCTGTACGAGAAGTACGAGAGAGAGGGTAAGGGTCGC------AAGTCTATCAAGGCTC 13173 Query 53841 GTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCT 53900 || | ||| |||| || ||| || |||| ||||| |||| || | |||| || Sbjct 13174 AGAAGCTTTGGTATGCCATTCTCGAGGCCCAGACAGAGACTGGAAACCCTTTCATGCTCT 13233 Query 53901 ACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAAC 53938 |||||||| |||| ||||||||||| |||||| Sbjct 13234 ACAAGGATCACTGCAACCGCAAGAGCAACCAAAAGAAC 13271 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 55728 TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAG-AAGAGTCTGATTGACATGAGT 55786 |||||| | ||| ||| |||||||||||| | ||| | || || | | ||| | Sbjct 14044 TCAAGGCTCTGTACAAGACTGTGTGGGAGATTTCTCAGCGACAGGTTG-TGCAGATGGCT 14102 Query 55787 GCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCT 55846 || || |||||||| | || || ||||| |||||||| ||||| |||| || | ||| Sbjct 14103 GCCGACCGTGGTGCCTTTATTGATCAGTCTCAGTCTCTCAACATTCACATGAAGGACCCT 14162 Query 55847 TCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGT 55906 || ||| |||| | | | |||||||| || |||||| || |||||||| || Sbjct 14163 ACAATGGGCAAGATCACCAGCATGCACTTCGCTGGCTGGAAGCTTGGTCTCAAGACCGGC 14222 Query 55907 ATGTACTATCTGCGGAC 55923 |||||||| || || || Sbjct 14223 ATGTACTACCTCCGTAC 14239 >seq933 Length=180792 Score = 129 bits (142), Expect = 6e-25 Identities = 190/269 (71%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 117302 CGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAAT 117361 || ||||| ||||||||| || |||||||| |||||| |||||||| | |||||| Sbjct 57740 CGGGTGAACGTGTAACGAGGACTGGCAGCATCAGAGCCACCTGCAAGACGAGAACCGAAG 57681 Query 117362 TGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTG 117421 | |||||| || |||| | ||| | ||| || | ||||| ||||| || || | Sbjct 57680 TTTCCACTAGGTTCCAGGCAGTTGATGTTATTTGAACCCACGAAGTTCTGGGCAAGACCA 57621 Query 117422 ACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAG 117481 | ||| || ||| || | ||||| ||||| || ||||| || || | ||| || Sbjct 57620 ATAATGGTCTGTTGAAGTGACTGTTCACCGTGGTGGTATGCCGTTTGTTCGGACACATAA 57561 Query 117482 CCCGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATC 117541 || |||| | | | |||||| ||||| ||| ||| |||||| ||| || || ||| Sbjct 57560 CCTGCCAATTCAACAACCTTCTTGTCTTTGATCAAGTTTCTCTTGAAGCACGCGTAGATC 57501 Query 117542 ACCTTGCGCTGACTTGGCTTCAGACCATC 117570 |||||||| |||| ||||| | ||||| Sbjct 57500 ACCTTGCGTTGACCGGGCTTGAATCCATC 57472 Score = 100 bits (110), Expect = 3e-16 Identities = 175/255 (69%), Gaps = 0/255 (0%) Strand=Plus/Minus Query 152022 CAAACGCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCC 152081 ||| || ||||| |||| || | ||||| ||||| ||||||||| || || | || Sbjct 57744 CAATCGGGTGAACGTGTAACGAGGACTGGCAGCATCAGAGCCACCTGCAAGACGAGAACC 57685 Query 152082 AAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAA 152141 || | |||| || || ||| ||||| ||| || | |||||||| ||||| || | Sbjct 57684 GAAGTTTCCACTAGGTTCCAGGCAGTTGATGTTATTTGAACCCACGAAGTTCTGGGCAAG 57625 Query 152142 ATTCACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGAT 152201 | | ||| || || || | |||||||||||| || ||||| || || | | Sbjct 57624 ACCAATAATGGTCTGTTGAAGTGACTGTTCACCGTGGTGGTATGCCGTTTGTTCGGACAC 57565 Query 152202 GTATCCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTA 152261 || || ||||| | | |||||| |||| | ||| ||| |||||| || ||||| Sbjct 57564 ATAACCTGCCAATTCAACAACCTTCTTGTCTTTGATCAAGTTTCTCTTGAAGCACGCGTA 57505 Query 152262 AATCACCTTGCGCTG 152276 ||||||||||| || Sbjct 57504 GATCACCTTGCGTTG 57490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547205151442800