Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20langsethiae_20[genbank_20GCA_5F001292635.1_202015-09-16] 1,586 sequences; 37,543,021 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq839 154 2e-32 seq700 129 8e-25 >seq839 Length=23613 Score = 154 bits (170), Expect = 2e-32 Identities = 515/790 (65%), Gaps = 16/790 (2%) Strand=Plus/Minus Query 77685 GATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCA-TATTGTATTATCTCGGTACA 77743 || || || || ||||| || ||||||| || | ||| || | || ||||| || || Sbjct 13357 GAGGCAAGGTTGCAAACAGCGACCTCATCAG-GAGCGCAGTACTCAATAATCTCAGTGCA 13299 Query 77744 TAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCA-TGAGT 77802 || || | | ||| || || || || | |||||||||||| ||||| ||| | Sbjct 13298 CAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGTGA-T 13240 Query 77803 CCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGA 77862 |||| || || || || || | || || || |||| | |||| ||| | | ||| | Sbjct 13239 CCTTGTAGAGCATGAAAGGGTTTCCAGTCTCTGTCTGGGCCTCGAGAATGGCATACCAAA 13180 Query 77863 CGACTCT-AGCTTTTATCATAGATTTGTATCGCCT---CTCTCTTTCATATTGA--GTAT 77916 | ||| ||| || || ||| ||| | | | |||||| || || | ||| Sbjct 13179 -GCTTCTGAGCCTTGAT---AGACTTGCGACCCTTACCCTCTCTCTCGTACTTCTCGTAC 13124 Query 77917 ATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACA 77976 | |||| || || ||||| || | ||| | | |||||||| || || ||||||| Sbjct 13123 AGAGCC--TCGAACTCATCACCGTAGCAGTCAGCAAGACCAGGGCACTCGTTGGGGCACA 13066 Query 77977 TCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAG 78036 | | | ||| || |||| | || || || ||||| ||||||||||| ||||| || | Sbjct 13065 TAAGAGTCCATTCGCCATTCTTCTCGACACGCTTCATGAAGAGATCAGGGATCCAAAGGG 13006 Query 78037 CAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAA 78096 | | || || || || | | || || || || |||||| ||||| || | Sbjct 13005 CCAGGAACAGGTCACGAGCGCGGACCTCCTCCTTACCGTGGTTCTTTCGGAGATCAAGGA 12946 Query 78097 ACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTAT 78156 |||| | | ||| | ||||| || || || || || || | | |||||||| || | Sbjct 12945 ACTCGAAGACATCGGCGTGCCAGGGCTCGAGGTAGATAGCGAAGGCACCAGGTCGCTTGT 12886 Query 78157 TACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATAC 78216 | || ||||| || | || | || ||||| || | || | || ||| |||| | || Sbjct 12885 TGCCACCCTGGTCGACGTAACGAGCAGTGTTGTTGAACACACGCAGCATGGGAACGACAC 12826 Query 78217 CGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGG 78276 ||||||| || ||||| || || | ||| ||| || | || || || | | Sbjct 12825 CGTTAGAAGTACCATTGGTCCCGGCAATGTAAGAGCCGGTGGCACGGATTCGGTGGACGT 12766 Query 78277 ATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGA 78336 | || || || || |||||||| || || | || ||| || | |||||||||| Sbjct 12765 TCAAGCCAATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAGA 12706 Query 78337 TACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAA 78396 |||| || || ||||| ||| |||| | || ||| || || |||| ||| | ||| Sbjct 12705 TACCGTCGATGCTGTCCTCCTTCATATCAACAAGGAAGCATGAGGACAGCTGAGGCTGAG 12646 Query 78397 CAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGAT 78456 || || || || |||| ||| || || ||||| || || | || ||| | || | Sbjct 12645 GGGTACCAGCGTTGAATAGTGTGGGGGAAGCATGAGTGAAGAACTTGCTAGACATGAGGT 12586 Query 78457 TGTATGTTTC 78466 ||||||| || Sbjct 12585 TGTATGTCTC 12576 >seq700 Length=246488 Score = 129 bits (142), Expect = 8e-25 Identities = 359/545 (66%), Gaps = 12/545 (2%) Strand=Plus/Minus Query 48156 TGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCA 48215 |||||||| || || | | || | |||||||| || || ||||||||||| || ||| Sbjct 27975 TGAAGACCCTCGTCACGAGAGATGAGCTCGTTAGAGAAAGTCAGACCGGGCATGAGACCA 27916 Query 48216 CGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCC 48275 || || |||||||| || || | || || | || ||||| || || || || || Sbjct 27915 CGCTTCTTGAGCCAGAAAATGGAAGCAAAGGCACCGCTGAAGAAGATACCCTCAACAGCA 27856 Query 48276 GCAAATGCGGTAAGTCTCTCTCC---GTAACTGGCTTCGTTGTGTATCCACCGTTGTGCC 48332 ||||| || ||| | || | | || | | || || ||||| || ||| Sbjct 27855 GCAAAGGCAACAAGACGCTGGGCAAAGGAAGAGTTCTTGTCCTGGATCCATCGAATAGCC 27796 Query 48333 CAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGA-GAAAGttttt 48391 |||||||||||||| | ||||| || || || | || || |||| | ||||| | Sbjct 27795 CAATCAGCCTTCTTTCGGATGCAAGGAATGGTGTCAACGGCGTTGAAGAGGTAAGTTCTC 27736 Query 48392 t--tCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATA 48449 | || || || || | ||| || || || | ||| || |||||||||| || Sbjct 27735 TGAGCA-GGC--TCCTTGATGTAGGTGTCAATGAGCAGAGAGTATGTTTCGGAGTGGATG 27679 Query 48450 TTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTA 48509 || || || ||||| || ||||| || |||| || || | |||||| ||||| Sbjct 27678 TTCTCCATCATGATCTGGAAACCGTAGAAGCATCGAGCCTCAGGGATCTGAACCTCGCCG 27619 Query 48510 CAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAAT 48569 | ||||| ||| | | ||||| || || || ||||| || ||||| || || | Sbjct 27618 CTGAATCGCTCAACAAGGTTCTCGTTGACAATACCATCGGAGGCGGCAAAGAAAGCAAGA 27559 Query 48570 ACATGTTTAATAAAATATTTTTCGTTGGAAGTCA---GTTTATTCCAGTCATTGATATCT 48626 | || || || || | |||| | ||| | | || |||||||||| || ||| Sbjct 27558 ATGTGGGAGATGAAGTACTGCTCGTCCGCAGTTAGACGGTTGTTCCAGTCATGGAGATCC 27499 Query 48627 TTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTC 48686 || || | ||| | || || |||||||| || || ||||| || || || ||||| | | Sbjct 27498 TTGGAAAGATCGATCTCCTCGGCTGTCCAGAAGGAAGCCTCGGCCTTCTTGTACATTTGC 27439 Query 48687 CATAT 48691 || || Sbjct 27438 CAGAT 27434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694655028191040