Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20langsethiae_20[genbank_20GCA_5F001292635.1_202015-09-16] 1,586 sequences; 37,543,021 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq839 172 8e-38 seq700 122 1e-22 >seq839 Length=23613 Score = 172 bits (190), Expect = 8e-38 Identities = 584/894 (65%), Gaps = 18/894 (2%) Strand=Plus/Minus Query 76280 GATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCAT 76339 || || || || ||||| || ||||||| || | | || | || ||||| ||||| Sbjct 13357 GAGGCAAGGTTGCAAACAGCGACCTCATCAGGAGCGCAGTACTCAATAATCTCAGTGCAC 13298 Query 76340 AGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACA-TGAGTC 76398 || || | ||| || ||||| || | |||||||||||| ||| || ||| || Sbjct 13297 AGGTTGGAGCTTCGGATGGTACCAAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGTGA-TC 13239 Query 76399 CTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGAC 76458 ||| || || | || || ||||||| || |||| | |||| ||| | | ||| | Sbjct 13238 CTTGTAGAGCATGAAAGGGTTTCCAGTCTCTGTCTGGGCCTCGAGAATGGCATACCAAA- 13180 Query 76459 GACTCT-AGCTTTTATTATAGATTTGTATCGCTT---CTCTCTTTCATA-TTGT-GTATA 76512 | ||| ||| || || ||| ||| | ||| |||||| || || || | ||| | Sbjct 13179 GCTTCTGAGCCTTGAT---AGACTTGCGACCCTTACCCTCTCTCTCGTACTTCTCGTACA 13123 Query 76513 TAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACAT 76572 | || || || ||||| || | ||| | | |||||| || || || || ||||| Sbjct 13122 GAGCC--TCGAACTCATCACCGTAGCAGTCAGCAAGACCAGGGCACTCGTTGGGGCACAT 13065 Query 76573 CAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGC 76632 | | ||| || |||| | || || || ||||| ||||||||||| ||||| || || Sbjct 13064 AAGAGTCCATTCGCCATTCTTCTCGACACGCTTCATGAAGAGATCAGGGATCCAAAGGGC 13005 Query 76633 AATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAA 76692 | || || || || | | || || || || |||||| ||||| ||||| Sbjct 13004 CAGGAACAGGTCACGAGCGCGGACCTCCTCCTTACCGTGGTTCTTTCGGAGATCAAGGAA 12945 Query 76693 CTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATT 76752 ||| | | ||| | ||||| || || || || || || | |||| ||||| || || Sbjct 12944 CTCGAAGACATCGGCGTGCCAGGGCTCGAGGTAGATAGCGAAGGCACCAGGTCGCTTGTT 12885 Query 76753 ACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCC 76812 || ||||| || | || | |||||||| || | || | || ||| |||| | || Sbjct 12884 GCCACCCTGGTCGACGTAACGAGCAGTGTTGTTGAACACACGCAGCATGGGAACGACACC 12825 Query 76813 GTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGA 76872 |||||| |||||||| || || | ||| ||| || ||||| || | | | Sbjct 12824 GTTAGAAGTACCATTGGTCCCGGCAATGTAAGAGCCGGTGGCACGGAT-TCGGTGGACGT 12766 Query 76873 T-AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGA 76931 | | ||| || || || ||||| || || || | ||||| || | || || |||| Sbjct 12765 TCAAGCCAATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAGA 12706 Query 76932 TGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAA 76991 | || || || || || ||| |||| | || ||| || || |||| ||| | ||| Sbjct 12705 TACCGTCGATGCTGTCCTCCTTCATATCAACAAGGAAGCATGAGGACAGCTGAGGCTGAG 12646 Query 76992 CAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGAT 77051 || || || || || | ||| || || ||||||||||| | || ||| | || | Sbjct 12645 GGGTACCAGCGTTGAATAGTGTGGGGGAAGCATGAGTGAAGAACTTGCTAGACATGAGGT 12586 Query 77052 TGTATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATC 77110 ||||||| || | || ||| ||||| || | || || ||||| |||||||| Sbjct 12585 TGTATGTCTCCAAGACACGTTCGATATCATCACCCCAG-ATACCAACAGCAACACGCATG 12527 Query 77111 AACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGAT 77164 | ||| || ||||| || || || | ||| | || | ||| | ||||||| Sbjct 12526 ATCATGTGTTGAGGACGCTCAGCAATTTTACCGTCAATCTGCAATAGGTATGAT 12473 >seq700 Length=246488 Score = 122 bits (134), Expect = 1e-22 Identities = 339/516 (66%), Gaps = 8/516 (2%) Strand=Plus/Minus Query 46672 TCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCG 46731 |||||||| || || || || ||||| || |||||||| |||||||| || || | || Sbjct 27948 TCGTTAGAGAAAGTCAGACCGGGCATGAGACCACGCTTCTTGAGCCAGAAAATGGAAGCA 27889 Query 46732 AAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCC---G 46788 || | || ||||| || || || ||||| || || || ||||| | || | | Sbjct 27888 AAGGCACCGCTGAAGAAGATACCCTCAACAGCAGCAAAGGCAACAAGACGCTGGGCAAAG 27829 Query 46789 TAACTGGCATCATTATGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGC 46848 || | | | || ||||| | ||||||||||||||| || | ||||| Sbjct 27828 GAAGAGTTCTTGTCCTGGATCCATCGAATAGCCCAATCAGCCTTCTTTCGGATGCAAGGA 27769 Query 46849 ATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCT 46908 || || || | || || ||||| | || | | | || || || | || || || Sbjct 27768 ATGGTGTCAACGGCGTTGAAGAGGTAAGTTCTCTGAGCAGGCTCCTTGATGTAGGTGTCA 27709 Query 46909 ATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAA 46968 || | ||| || |||| || || ||||| || || ||||| || ||||| || Sbjct 27708 ATGAGCAGAGAGTATGTTTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAG 27649 Query 46969 CATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAA-TTCTCATTCAC 47027 |||| || |||| ||||| ||||| | ||||| ||| |||| ||||| || || Sbjct 27648 CATCGAGCCTCAGGGATCTGAACCTCGCCGCTGAATCGCTCA-ACAAGGTTCTCGTTGAC 27590 Query 47028 TATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGT 47087 || ||||| || ||||| || || | | || || || || | || || | Sbjct 27589 AATACCATCGGAGGCGGCAAAGAAAGCAAGAATGTGGGAGATGAAGTACTGCTCGTCCGC 27530 Query 47088 AGTCAGT---TTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCA 47144 ||| || || |||||||||| || ||| || || | ||| | || || |||||||| Sbjct 27529 AGTTAGACGGTTGTTCCAGTCATGGAGATCCTTGGAAAGATCGATCTCCTCGGCTGTCCA 27470 Query 47145 GAATGACGCCTCTGCTTTTTTATACATATTCCATAT 47180 ||| || ||||| || || || ||||| | ||| || Sbjct 27469 GAAGGAAGCCTCGGCCTTCTTGTACATTTGCCAGAT 27434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712920266075520