Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20mangiferae_20[genbank_20GCA_5F900044065.1_202016-12-06] 254 sequences; 46,292,722 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq143 98.7 8e-16 seq225 93.3 3e-14 >seq143 Length=3159380 Score = 98.7 bits (108), Expect = 8e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || || ||||| || ||||||||||||| | ||| | ||| Sbjct 2351004 AGCACCAAGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGGAAAGAGTTCGACCATCC 2350945 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGT-C 16842 || | ||| ||||| ||| | || || |||||||||||| ||| | ||||| |||| | Sbjct 2350944 TCAAGTTGCTTGCCAGCAAAGATGAGTCGCTGTTGGTCCGGAGGAATACCCTCCTTGTCC 2350885 Query 16843 GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGT 16902 | | ||||| |||||| | | | |||||| | ||| ||||| |||||||| Sbjct 2350884 TGGATCTTGCT-CTTCACATTATCAATGGTGTCGGATGACTCGACTTCCAGAGTGATGGT 2350826 Query 16903 TTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| || || || ||||| || || ||||| Sbjct 2350825 CTTTCCAGTAAGGGTCTTGACGAAGATTTGCAT 2350793 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || || | ||| || ||||||||||| || |||||||| || | | || | ||||| Sbjct 2350494 AGAACAAGATGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCGTCC 2350435 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | || ||||| ||| |||| | || || ||||| || | |||||| ||||| Sbjct 2350434 TCAAGCTGCTTGCCGGCAAAAATCAAGCGTTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 2350375 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||| | ||| || | | | | ||||||| | ||| || | ||||||||| Sbjct 2350374 TGAATCTTGGACTTGACGTTGTCGATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTC 2350315 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || |||||||| || ||||| || |||||||| Sbjct 2350314 TTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 2350283 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || || |||||||| || |||||||||||| || ||| | || ||||| || Sbjct 2351223 TGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCATCTTCCAACTGC 2351164 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAAT-TTG 16851 || || || | ||||| ||||| || || || | ||||| || || ||| ||| Sbjct 2351163 TTACCAGCGAAGATAAGACGCTGCTGATCAGGGGGGATACCCTCCTTATCCTGAATCTTG 2351104 Query 16852 CTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGT 16911 || |||||| | | | | |||||| | | ||| || | ||||||||| ||||| || Sbjct 2351103 CT-CTTCACGTTGTCGATAGTGTCACTAGACTCAACCTCAAGGGTGATGGTCTTTCCAGT 2351045 Query 16912 CAGCGTTTTGACAAAAATCTGCAT 16935 || || || || ||||||||||| Sbjct 2351044 GAGAGTCTTCACGAAAATCTGCAT 2351021 >seq225 Length=1293757 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || ||||||||||| || |||||||||||| || ||| | | ||| Sbjct 459260 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCC 459201 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | || ||||| ||| | || || ||||| ||||| || | |||||| ||||| Sbjct 459200 TCGAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 459141 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 || | ||| || | | | | |||||| | |||| || | |||||| || Sbjct 459140 TGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTC 459081 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 || || || || || ||||| ||||||||||| ||| Sbjct 459080 TTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTTG 459045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405086745999460