Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20mangiferae_20[genbank_20GCA_5F900044065.1_202016-12-06] 254 sequences; 46,292,722 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq118 141 1e-27 seq101 114 2e-19 seq125 105 1e-16 >seq118 Length=2030615 Score = 141 bits (156), Expect = 1e-27 Identities = 231/328 (70%), Gaps = 5/328 (2%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| ||||| ||| ||| | ||||| ||| || || |||||||| || ||||| Sbjct 1883445 ACCCTCGTCACGAGAGATGAGCTCGTTAGAGAAGGTCAGACCAGGCATGAGACCACGCTT 1883504 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||||||||| || || | | ||| || ||| ||||| ||||| || || || || Sbjct 1883505 CTTGAGCCAGAAAATAGAAGCGAAGGCACCACTGAAGAAGATACCCTCAACAGCAGCGAA 1883564 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519 | || || |||| |||||| | | || || | | | | |||||| || ||||| Sbjct 1883565 AGCAACCAGACGCTGGGCAAAGGAGG--AGTCCTTATCT-TGGATCCATCGGATGGCCCA 1883621 Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTG-GTCCTTCT 794578 || ||||| || | | |||| | || || |||||| ||||||| || | || Sbjct 1883622 GTCAGCCTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGTTGAAGAGGTACGTTCG-CT 1883680 Query 794579 CGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTT 794638 | | || ||||||| |||||||||||||||||| ||||||||||| ||||| ||||| | Sbjct 1883681 GGGCAGGCTCCTTGATGTAGGTGTCGATGAGGAGGGAGTAGGTCTCGGAGTGAATGTTCT 1883740 Query 794639 CGATGGCGATCTGGAAGCCATAAAAGCA 794666 | || |||||||||||| || || || Sbjct 1883741 CCATCATGATCTGGAAGCCGTAGAAACA 1883768 Score = 109 bits (120), Expect = 9e-18 Identities = 176/251 (70%), Gaps = 4/251 (2%) Strand=Plus/Plus Query 793892 GACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAG 793951 ||| || ||||| || ||| | || ||| |||||| |||||||||||||| | || Sbjct 1883124 GACACCGGCCTTTTGGTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGCCAAG 1883183 Query 793952 CGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCC--G 794009 ||||| ||||| | ||| ||||||| | | |||| ||||||| || | Sbjct 1883184 GGAGATGTTTTCCATGAAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTCTCGTTGCCAAG 1883243 Query 794010 AGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTC 794069 ||||| | || || || || |||||||| ||||||||||| ||||||| | | |||| Sbjct 1883244 AGCGA--CCAGGAGACGATCAGCGACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTC 1883301 Query 794070 ATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCC 794129 ||||||| ||| || ||| || | ||| ||| ||||| | || || |||||| Sbjct 1883302 ATGCCGAGGAGGGCACAGGGAAGGGCCTCAGTGAGGAACTCCTGTTCAATGGTGACGGCA 1883361 Query 794130 TCGATGATGAT 794140 || ||||||| Sbjct 1883362 TCAGTGATGAT 1883372 >seq101 Length=4191135 Score = 114 bits (126), Expect = 2e-19 Identities = 180/258 (70%), Gaps = 0/258 (0%) Strand=Plus/Minus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 |||||||||||| || || |||| ||| ||||| || ||||| || |||| ||||| || Sbjct 2589235 CTGGTCGACATACCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACCGTTCGA 2589176 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 |||||||| || || | ||| | ||| | || || | |||| | | || Sbjct 2589175 TGTACCGTTGGTACCGGCGATGTATGAGCCAGTAGCACGGATACGGTGCACATTCAGACC 2589116 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 || || || ||| ||||||||| | || || | || || || |||||||| ||||| Sbjct 2589115 AATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTC 2589056 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 || |||| ||||||| || | || ||||| || || || || | | || || Sbjct 2589055 AATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAACTGGGGCTGAGGGGTACC 2588996 Query 2073780 GGCATTGAAGAGCGTGGG 2073797 |||||||||||||||||| Sbjct 2588995 GGCATTGAAGAGCGTGGG 2588978 Score = 98.7 bits (108), Expect = 2e-14 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 |||||||||||| ||||| |||||||| |||||||| ||| |||| ||||| ||| | | Sbjct 1808483 GTACTTGGTGACAGCCTTAGTACCCTCAGAGACGGCATGCTTGGCAAGTTCACCGGGGAG 1808424 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGG 1485562 |||||| || || | |||||||||||| |||| Sbjct 1808423 GATCAGACGGACAGAGGTCTGGATCTCTCGGG 1808392 >seq125 Length=3560416 Score = 105 bits (116), Expect = 1e-16 Identities = 90/111 (81%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 2035651 CCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTA 2035710 |||||||||||||||||||||| || || || | || || ||||| || |||||| | | Sbjct 1898146 CCAACTACCTCGACATCAAGCCTCTTCTTGACGTCGGTTGTAAGACTGTTGCCAACATGA 1898087 Query 2035711 TCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCAAGTACG 2035761 ||||||||||||| ||||| || |||||||| || || ||||| | | ||| Sbjct 1898086 TCAAGGGCAAGTCTCCCGAAGAGATCCGCAAAACTTTCAACATTACGAACG 1898036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916219380861506