Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20meridionale_20[genbank_20GCA_5F001717825.1_202016-08-31] 676 sequences; 36,468,289 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq643 168 8e-37 seq37 136 5e-27 >seq643 Length=117438 Score = 168 bits (186), Expect = 8e-37 Identities = 627/971 (65%), Gaps = 14/971 (1%) Strand=Plus/Minus Query 53711 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA-TATTGTATTATCTCAGTGCA 53769 || || || || ||||| || ||||||| || | ||| |||| || ||||||||||| Sbjct 47997 GAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGC-GCAGTATTCAATGATCTCAGTGCA 47939 Query 53770 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 53829 || || | |||||| || | || | ||| |||||||| || || ||| Sbjct 47938 CAGGTTGGAGCTTCGGATGGTACCAAGGTTCTTTTGGTTACTCTTGCGATTGCAGTGATC 47879 Query 53830 CTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGAC 53889 ||| || || ||||| || | || || || |||||| || | ||| || | ||| | Sbjct 47878 CTTGTAGAGCATGAAAGGGTTTCCGGTCTCTGTCTGGGCCTCAAGAATGGCGTACCAAAG 47819 Query 53890 GACACGAGCCTTTATTATAGATTTGTATCTCTTT---TCTCTTTCGTATAGTGTATACAA 53946 ||||||| || ||| ||| | ||| ||||| ||||| | |||| Sbjct 47818 CTTCTGAGCCTTGAT---AGACTTGCGACCCTTACCCTCTCTCTCGTACTTTTCGTACAG 47762 Query 53947 TCGTTCAAACTCGTCTCCCCAAACATTGTCCAAT-CCAGGACATTCATCCGGACACATCA 54005 ||||| ||||| || | || | ||| ||||| ||||| | || ||||| | Sbjct 47761 AGCCTCAAATTCGTCACCGTAG-CAGTCAGCAAGGCCAGGGCATTCGTTAGGGCACATGA 47703 Query 54006 ACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTA 54065 | ||| || |||| || || || ||||| || |||||||| ||||||||||||| Sbjct 47702 GAGTCCATTCGCCGTTTCTCTCGACACGCTTCATGAAAAGATCAGGGATCCAAAGAGCTA 47643 Query 54066 TAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACG 54125 || || || | | | ||||| || || ||||||| ||||| |||||| Sbjct 47642 AGAACAGGTCACGAGCGCGGACCTCCTCCTTACCGTGATTCTTTCGGAGATCAAGGAACT 47583 Query 54126 CCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTC 54185 | | | || | ||||| || || | ||| |||| | | ||||| || ||||| | Sbjct 47582 CGAAGACGTCGGCGTGCCATGGCTCAAGGTAGATGGCGAAGGCACCAGGTCGCTTGTTAC 47523 Query 54186 CTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCAT 54245 | ||||| || | ||| | ||| ||||| || | || | || ||| |||| ||||| | Sbjct 47522 CACCCTGGTCAACGTAACGAGCAGTGTTGTTGAACACACGCAGCATGGGAACGATACCGT 47463 Query 54246 TGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT- 54304 |||| | ||||||||| |||| ||| || ||| ||||||| || | | | | Sbjct 47462 TGGAAGTACCATTGGTACCGGCGATGTAAGAGCCAGTGGCACGGAT-TCGGTGGGCGTTC 47404 Query 54305 AGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 54364 | || || || || ||||| || || || | || || || | ||||| ||||| Sbjct 47403 AAGCCAATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAGATA 47344 Query 54365 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 54424 || || || || || ||| |||| | || || || || || | || | | | Sbjct 47343 CCATCAATGCTGTCCTCCTTCATATCAACAAGGAAGCATGATGAAAGCTGAGGCTGTGGA 47284 Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 54484 || || || || ||||| || || || || || || | || || | || ||| Sbjct 47283 GTACCGGCGTTGAATAAAGTGGGGCTTGCATGAGTGAAGAACTTGCTTGACATGAGGTTG 47224 Query 54485 TACGTCTCGATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAA 54543 || ||||| | | || ||||| || | ||||| || ||||| ||||| | Sbjct 47223 TATGTCTCCAAGACACGCTCAATATCGTCACCCCAG-ATTCCAACAGCGACTCGCATGAT 47165 Query 54544 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAA 54603 ||| ||||| || | ||| | || ||| || || | |||||||| ||| | ||| Sbjct 47164 CATATGCTGCGGGCGCTCAGCAATTTTGCCGTCAATCTGTAGCAAGTATGATCTGGACAA 47105 Query 54604 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAG 54663 ||| || |||||||||||||| ||||| || || || | ||| |||||| ||| Sbjct 47104 GGTTCGGAAGCCAAAATAGTTGTAGTTGAAGTCGCGATCATAGACAATCGCTGAGTCGAG 47045 Query 54664 TTTATCCTTAT 54674 || || |||| Sbjct 47044 TTCCTCTTTAT 47034 >seq37 Length=309367 Score = 136 bits (150), Expect = 5e-27 Identities = 368/559 (66%), Gaps = 8/559 (1%) Strand=Plus/Plus Query 24134 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 24193 ||| || || ||| ||| |||||||| || | | ||| | ||||| ||||| | || Sbjct 135575 ACAGGCAAAGTCGGTGTGAAGACCCTCATCACGAGAAATGAGCTCGTTAGAAAAGCTCAG 135634 Query 24194 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAA 24253 || ||||| ||||||||||| || ||||| || ||||| ||||| | || ||||| Sbjct 135635 ACCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCAAAGGCACCGCTGAAGAA 135694 Query 24254 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCAT---G 24310 || || || || || ||||| |||| ||| | | || | | | | | || | Sbjct 135695 GATACCCTCAACGGCAGCAAAAGCAACAAGACGCTGAGCAAAGGTAGAGTTCTTATCCTG 135754 Query 24311 TATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCAT 24369 ||||| | || |||||||| ||||||||| | ||||| || || || | || | Sbjct 135755 GATCCATCGGATG-GCCCAATCCGCCTTCTTTCGGATGCAAGGAATAGTGTCAACGGCGT 135813 Query 24370 TAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACA 24429 | ||||| || | | | || || | || ||||| || | || || Sbjct 135814 TGAAGAGGTATGTACGCTGGGCAGGGTCCTTGATGTAGGTATCGATGAGGAGGGAGTATG 135873 Query 24430 TTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAA 24489 |||| || || ||||| || || || || || || ||||| |||| |||||||| | Sbjct 135874 TTTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCATAGAAGCATCGAGCCTCGGGGA 135933 Query 24490 TCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTG 24549 |||| || || | ||||| || | | ||| ||||| || || ||||| ||| | Sbjct 135934 TCTGGACCTCGCCGCTGAATCGCTCAACAAGATTCTCATTGACGATGCCGTCGGAGGCAG 135993 Query 24550 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGT---TTATTCC 24606 | || || || | | || || || |||| ||||||| || | | || |||| Sbjct 135994 CGAAGAAAGCAAGAATGTGGGAGATGAAGTATTGCTCGTCTGAAGTCAATCGGTTGTTCC 136053 Query 24607 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 24666 | || | || ||| || || | ||| | || || ||||||| || || |||||||||| Sbjct 136054 AGTCGTGGAGATCCTTGGAGAGATCGATCTCCTCAGCTGTCCAGAAGGAGGCCTCTGCCT 136113 Query 24667 TTTTATACATATTCCAGAT 24685 | || ||||| | |||||| Sbjct 136114 TCTTGTACATTTGCCAGAT 136132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593716583052480