Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20meridionale_20[genbank_20GCA_5F001717825.1_202016-08-31] 676 sequences; 36,468,289 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq643 262 4e-65 seq433 91.5 1e-13 >seq643 Length=117438 Score = 262 bits (290), Expect = 4e-65 Identities = 622/936 (66%), Gaps = 8/936 (1%) Strand=Plus/Minus Query 23027 GAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACAT 23086 |||||||| ||||| || || ||||| || || ||| || | || || || || Sbjct 47997 GAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGCGCAGTATTCAATGATCTCAGTGCAC 47938 Query 23087 AGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCC 23146 || ||| | || || || | || | ||||| || || |||||||| |||| Sbjct 47937 AGGTTGGAGCTTCGGATGGTACCAAGGTTCTTTTGGTTACTCTTGCGATTGCAGTGATCC 47878 Query 23147 TTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATA 23206 |||||||||||| | || | || ||||| ||| | ||| | || || ||| | Sbjct 47877 TTGTAGAGCATGAAAGGGTTTCCGGTCTCTGTCTGGGCCTCAAGAATGGCGTACCAAAGC 47818 Query 23207 GTCTGAGCGTGAACACGTCGCACGTACCTG-CCTTCTTCCTCGTACTTTTGGTACAACGC 23265 ||||||| | | | | | || ||| || ||| ||||||||||| ||||| || Sbjct 47817 TTCTGAGCCTTGATA-GACTTGCGACCCTTACCCTCTCTCTCGTACTTTTCGTACAGAGC 47759 Query 23266 GTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACT 23325 ||||||||| ||||||| ||||| || ||||| || ||| | || ||||||||| | Sbjct 47758 CTCAAATTCGTCACCGTAGCAGTCAGCAAGGCCAGGGCATTCGTTAGGGCACATGAGAGT 47699 Query 23326 CCACATTGAGTCATTT---TCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTA 23382 ||| | | | ||| || || || |||| |||||||| || ||||| ||||| | Sbjct 47698 CCA---TTCGCCGTTTCTCTCGACACGCTTCATGAAAAGATCAGGGATCCAAAGAGCTAA 47642 Query 23383 GAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTC 23442 |||||| || || ||||| |||||||| || ||| |||||| | ||| | || || Sbjct 47641 GAACAGGTCACGAGCGCGGACCTCCTCCTTACCGTGATTCTTTCGGAGATCAAGGAACTC 47582 Query 23443 CAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCC 23502 || ||||| || ||||| ||||| ||||| | ||| || || || |||| ||| || || Sbjct 47581 GAAGACGTCGGCGTGCCATGGCTCAAGGTAGATGGCGAAGGCACCAGGTCGCTTGTTACC 47522 Query 23503 GCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTT 23562 ||||| || |||||||| || ||||||||| |||| | ||||| || |||| |||||| Sbjct 47521 ACCCTGGTCAACGTAACGAGCAGTGTTGTTGAACACACGCAGCATGGGAACGATACCGTT 47462 Query 23563 GGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAA 23622 ||| | || || || | || || | || || | ||| ||| || Sbjct 47461 GGAAGTACCATTGGTACCGGCGATGTAAGAGCCAGTGGCACGGATTCGGTGGGCGTTCAA 47402 Query 23623 ACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCC 23682 || || || || || || || ||||| || || || || || |||||||| || Sbjct 47401 GCCAATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAGATACC 47342 Query 23683 CTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGT 23742 || ||||||||||| || | | || | ||| || || || | || | | || || Sbjct 47341 ATCAATGCTGTCCTCCTTCATATCAACAAGGAAGCATGATGAAAGCTGAGGCTGTGGAGT 47282 Query 23743 AGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTA 23802 | |||| ||| | || ||||| || || || ||| | | ||||| || ||||| Sbjct 47281 ACCGGCGTTGAATAAAGTGGGGCTTGCATGAGTGAAGAACTTGCTTGACATGAGGTTGTA 47222 Query 23803 CGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCAT 23862 || || | | | ||||| || || || || || | ||||| ||||| ||||| Sbjct 47221 TGTCTCCAAGACACGCTCAATATCGTCACCCCAGATTCCAACAGCGACTCGCATGATCAT 47162 Query 23863 GTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGT 23922 | || || | ||| | | ||||| ||| | | || ||||| | || || Sbjct 47161 ATGCTGCGGGCGCTCAGCAATTTTGCCGTCAATCTGTAGCAAGTATGATCTGGACAAGGT 47102 Query 23923 TTTAAATCCAAAATAGTCATAGTTAAAGTCACGATC 23958 | || |||||||||| ||||| ||||| ||||| Sbjct 47101 TCGGAAGCCAAAATAGTTGTAGTTGAAGTCGCGATC 47066 Score = 100 bits (110), Expect = 3e-16 Identities = 223/331 (67%), Gaps = 4/331 (1%) Strand=Plus/Minus Query 22241 TTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCCATATTTATCAA--TG 22298 |||| |||||| |||||| || || || || || || || ||||| | | ||| || Sbjct 48783 TTGAGAGACTGAGACTGATCAATGAAGGCACCACGGTCAGCAGCCATCTGCA-CAACCTG 48725 Query 22299 TACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCTCTAACGGTATCGATT 22358 | ||| || || ||||| || ||||||||||| | ||||||| || || Sbjct 48724 T-CGCTGAGAAATCTCCCACACAGTCTTGTACAGAGCCTTGATCTCGGCAGGGATGTTGG 48666 Query 22359 CGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAATCGTATCGTTCCACA 22418 ||| |||||| || ||||||| ||||| || || || | |||| ||| | Sbjct 48665 GGATGTTCTGGATAGAACCGTTATCAGCAATGATGCGGTTCTTCATAGCATCGGACCAAA 48606 Query 22419 AACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGAAACTCGCCGGACA 22478 ||| ||| || | ||| |||| || |||| || || || |||||||| | | Sbjct 48605 GACCCATGTCGACAAGATCCTTGAGAAGCCAGGGGTTGACAACCTGGAACTCGCCAGCAA 48546 Query 22479 AGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTA 22538 ||| ||||||||||| |||||||| ||| | || || || |||| ||||| || || | Sbjct 48545 GGACTCGGCGTTGGTAGATGTTGGAGGTGTAAGGCTCAAAGCATTCGTTGTTGCCAAGAA 48486 Query 22539 TCTGAGCGGTCGAAGCGGTCGGCATCGGCGC 22569 |||| | || ||||| ||||| || || Sbjct 48485 TCTGCGAAGTACTGGCGGTAGGCATAGGAGC 48455 >seq433 Length=46257 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| |||||||| ||||| || || || || ||||||||| | || || || | || Sbjct 40918 CATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTC 40859 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| | || | ||||| | || ||||||||| || | || || ||||| Sbjct 40858 CGACACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCA 40799 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| || || || ||||| || ||| | || || || ||||||| || || Sbjct 40798 GCAGCGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTACAA 40739 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || || || ||||| |||| || Sbjct 40738 CATCCAGAAGGAGTCCACCCTTCACTTGGTCCT 40706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445762633273920